PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G00400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 334aa MW: 37006.8 Da PI: 7.5824 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.2 | 1.3e-31 | 61 | 114 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+av++LGG+++AtPk +l+lm+v gL++ hvkSHLQ+YR+ LPERR11G00400.1 61 PRLRWTPELHHCFVRAVDRLGGQDRATPKLVLQLMNVRGLSIGHVKSHLQMYRS 114 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-30 | 57 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.035 | 57 | 117 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-15 | 58 | 115 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-23 | 60 | 116 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.4E-9 | 62 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MGKKEEEEGS DQSNTDGGGA PAANNNNWSS TTSTSTVEEE EGQQGERSSS SVRPYVRSKN 60 PRLRWTPELH HCFVRAVDRL GGQDRATPKL VLQLMNVRGL SIGHVKSHLQ MYRSKKIDES 120 GQVIVGGCSW RSDEQQQQYH HLQMQGGHGG QAYNVGHLSL PAALHQHHRH ITAGAGTTVL 180 QSRFGNAWSP WRCHGHGSYP WLRAGHHLPV GSKPYYPPAA EAESPFHSSD RYVARAPSSH 240 LEDFVQASSS SRGDHIMNHQ RSILKKIICN EDGNHQEEGA LNLDLTLDIG PRREKRKREC 300 SWKKQEGDHD HTTIAIGGDQ EAESCATGLS LSLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 291 | 298 | RREKRKRE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00297 | DAP | Transfer from AT2G38300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G00400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107297 | 1e-140 | AK107297.1 Oryza sativa Japonica Group cDNA clone:002-126-C05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015617115.1 | 1e-140 | probable transcription factor RL9 isoform X1 | ||||
TrEMBL | A0A0D9XN78 | 0.0 | A0A0D9XN78_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G00400.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4408 | 36 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 3e-31 | G2-like family protein |