PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G07380.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 402aa    MW: 45608.2 Da    PI: 4.6895
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G07380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.26e-34461372102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++ + ++sws+ gnsfvv+d++ fa+ +Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+
  LPERR10G07380.1  46 FLTKTYDLVEDPASDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLK 130
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +ikr+k 
  LPERR10G07380.1 131 TIKRRKP 137
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.45E-3542135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-6042135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3742135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDPAAAGIVK EEMVEAAQQN GGGGGVGAAA APRPMEGLHE VGPPPFLTKT YDLVEDPASD  60
GVVSWSRAGN SFVVWDPHVF ADLLLPRLFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEG  120
FLRGQRHLLK TIKRRKPPSN APPSQQQSLT SCLEVGEFGF EEEIDRLKRD KNILISEVVK  180
LRQEQQATKD HVKAMEDRLR AAEQKQVQMM GFLARAMRNP EFFQQLAQQK EKRKELEDAI  240
SKKRRRPIDN VPFYSPGETS QTEQLDSSYL FDSGVLNDFS EPGIPELENL AVNIQDLGKG  300
KVDEEKQDQA NRQTELGDDF WAELLVEDFA GKEEQSELDG TVEGIDELAQ QLGTIEDHLE  360
QTDTIDLWKY NRLHKVFMVI PRLWTPCPEA VYTYCFAIDR GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-254413518120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128134LKTIKRR
2231245KRKELEDAISKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G07380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3444880.0AY344488.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876421.10.0heat stress transcription factor A-2c-like
SwissprotQ338B00.0HFA2C_ORYSJ; Heat stress transcription factor A-2c
TrEMBLA0A0D9XJS30.0A0A0D9XJS3_9ORYZ; Uncharacterized protein
STRINGLPERR10G07380.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-111heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Singh A, et al.
    OsHsfA2c and OsHsfB4b are involved in the transcriptional regulation of cytoplasmic OsClpB (Hsp100) gene in rice (Oryza sativa L.).
    Cell Stress Chaperones, 2012. 17(2): p. 243-54
    [PMID:22147560]