PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G06660.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 362aa    MW: 37633.7 Da    PI: 6.5075
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G06660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-19107160356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eq+++Le+ Fe+ +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  LPERR10G06660.1 107 KKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 160
                      456899***********************************************9 PP
2HD-ZIP_I/II127.84.6e-41106197192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      ekkrrls eqv++LE+sFe+ +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlE+d++aL+r++da ++en++L + +++L++e++
  LPERR10G06660.1 106 EKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLERDFDALRRQLDAARAENDALLSLNSKLHAEIA 197
                      69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-1998164IPR009057Homeodomain-like
PROSITE profilePS5007117.313102162IPR001356Homeobox domain
SMARTSM003893.9E-19105166IPR001356Homeobox domain
CDDcd000861.15E-17107163No hitNo description
PfamPF000462.3E-16107160IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-19109169IPR009057Homeodomain-like
PRINTSPR000315.4E-6133142IPR000047Helix-turn-helix motif
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PRINTSPR000315.4E-6142158IPR000047Helix-turn-helix motif
PfamPF021833.9E-9162201IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAASSNGGMA SSSPFFPTNF LLQMQQPLSH HHLQDHHHHH HHLLPPPPPS LTPFLPDHLA  60
VGGGAIAAPP PPPPPMYDAS GGGDAASEDE EDGCGGGIGI GGGGGEKKRR LSVEQVRTLE  120
RSFESGNKLE PERKAQLARA LGLQPRQVAI WFQNRRARWK TKQLERDFDA LRRQLDAARA  180
ENDALLSLNS KLHAEIAAMK GGTAAAGGGG GSSCRQEAAS ELINLNVKET EASCSNRSDN  240
SSSEINLDIS RPPPVTANES PDVNHRSGGA GIQFYASIGR GGGGDIEQLL LRGGHSPSPA  300
AAVTAPPATT TMLPKMELGM GGGGGDDAAG GGGGGGFGGL LCGAVDEQPP FWPWADGHHH  360
FH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154162RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G06660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2877001e-164AK287700.1 Oryza sativa Japonica Group cDNA, clone: J065130H05, full insert sequence.
GenBankCT8377491e-164CT837749.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA049M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613423.11e-123homeobox-leucine zipper protein HOX23-like
SwissprotA2Z7341e-123HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
SwissprotQ94GL51e-123HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBLA0A0D9XJH30.0A0A0D9XJH3_9ORYZ; Uncharacterized protein
STRINGLPERR10G06660.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-36HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]