PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G11560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 369aa    MW: 39059.7 Da    PI: 6.1098
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G11560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09179226455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  LPERR09G11560.1 179 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 226
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-17173244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-10173230No hitNo description
PROSITE profilePS5088815.459175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17175243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6179226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDSDYVTGLL MSAAAAGIDG LGVLDGGGFL ETLCGGPGFA ERAARMCGGG GGGGLFGVAP  60
AAAGNGERGG SREGSSVSDP AWAAHAANAR KRKTPAPATA SASAGKEKVG ELKQPESKKC  120
KVEIKPKVEE EAANDGSVGD RGQKQGGKGK NSKDSKPAAA EPPKDYVHVR ARRGQATDSH  180
SLAERVRREK ISQRMKVLQD LVPGCNKVVG KALMLDEIIN YVQSLQQQVE FLSMKLATVN  240
PQLDFSNLST LLQKDMFQPC GPSVNSVFPL ESAGTAFPFC DQADFFQSFG LGIMESQCTL  300
DLVNTALPHT ASTQYAFQKQ QKDLWEDNTF HYNDEQSQED AVSAPNFDGS LLINSITTAT  360
IAHHHQADA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G11560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0590360.0AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651378.10.0transcription factor BHLH089-like
SwissprotQ9SRT24e-56BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A0D9XFB20.0A0A0D9XFB2_9ORYZ; Uncharacterized protein
STRINGLPERR09G11560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]