PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G09170.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 382aa MW: 40776.2 Da PI: 9.4521

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G09170.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.6	6.5e-14	303	353	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ Nk+L + e+ ++ LPERR09G09170.1 303 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNKELERKQAEIMEM 353 79************************************9998777776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.7E-11	299	364	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.76	301	352	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-10	303	351	No hit	No description
Pfam	PF00170	9.4E-12	303	354	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.41E-24	303	355	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.1E-13	303	352	No hit	No description
PROSITE pattern	PS00036	0	306	321	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MLTDRWGGRR REEAMEFKNG GSSSDRRPPA AEGATLARQG SVYSLTFDEF QSALAGGGGV 60 GGGGGSGFGK DFSSMNMDEL LRSIWTAEES QAMASASGSA SGLGMAMGAP PPATSLQRQG 120 SLTLPRTLSA KTVDEVWRNL VRDDPPPVGA DGGGGGSEMP PHRQSTLGEM TLEEFLVRAG 180 VVRENPPAPL PPMPPQMPPQ PVPVAPKTTA FLGNFPGAND AAAASLGFAP IGIGDPVLGN 240 GLMPRAVGLP GGALAMQTAV NQFDSGDKGN SDLSSPTEPM PYSFEGLVRG RRNGGGVEKV 300 VERRQRRMIK NRESAARSRA RKQAYTMELE AEVQKLKELN KELERKQAEI MEMQKNEVEE 360 MIKDPFGRRK RVCLRRTLTG PW

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MLTDRWGGRR REEAMEFKNG GSSSDRRPPA AEGATLARQG SVYSLTFDEF QSALAGGGGV  60
GGGGGSGFGK DFSSMNMDEL LRSIWTAEES QAMASASGSA SGLGMAMGAP PPATSLQRQG  120
SLTLPRTLSA KTVDEVWRNL VRDDPPPVGA DGGGGGSEMP PHRQSTLGEM TLEEFLVRAG  180
VVRENPPAPL PPMPPQMPPQ PVPVAPKTTA FLGNFPGAND AAAASLGFAP IGIGDPVLGN  240
GLMPRAVGLP GGALAMQTAV NQFDSGDKGN SDLSSPTEPM PYSFEGLVRG RRNGGGVEKV  300
VERRQRRMIK NRESAARSRA RKQAYTMELE AEVQKLKELN KELERKQAEI MEMQKNEVEE  360
MIKDPFGRRK RVCLRRTLTG PW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G09170.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612550.1	0.0	bZIP transcription factor TRAB1-like
Swissprot	Q6ZDF3	1e-116	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A0D9XEG6	0.0	A0A0D9XEG6_9ORYZ; Uncharacterized protein
STRING	LPERR09G09170.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.2	3e-38	ABRE binding factor 4

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]