PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR09G08720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 347aa MW: 36104.1 Da PI: 6.07 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.7 | 8.2e-18 | 165 | 219 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k LPERR09G08720.1 165 RKKLRLSKEQSAFLEDSFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 219 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.4 | 6e-41 | 165 | 255 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk LPERR09G08720.1 165 RKKLRLSKEQSAFLEDSFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 255 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.6E-18 | 149 | 215 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.88E-18 | 155 | 222 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.973 | 161 | 221 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-16 | 163 | 225 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.18E-17 | 165 | 222 | No hit | No description |
Pfam | PF00046 | 3.0E-15 | 165 | 219 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 196 | 219 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 6.32E-4 | 212 | 253 | No hit | No description |
SMART | SM00340 | 1.4E-24 | 221 | 264 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 1.3E-10 | 221 | 255 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 347 aa Download sequence Send to blast |
MELGLSLGET AMADAGRELV LGLGIGVTRE EAAAAATAET ARRELEFGSS RCGGSSPEPT 60 VRLTLLPMVP GLGGLSWPPS ETRGFDVNRP PSCGAGAGAG AEEEEQDDAA GAALSSSPNN 120 SAGSFPMDDF SGHGRDAAAA AGGGGGGGER SCSRASDEDD GGSARKKLRL SKEQSAFLED 180 SFKEHSTLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCETLTEE 240 NRRLQKELAE LRALKTVHPF YMHLPATTLS MCPSCERVAT NSAPATAAAV AASSTAGPTT 300 SAGIASAGGA AAAPDHRPSS FAALFTSPRG FPLSSGQQQQ QQPPTSS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 213 | 221 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR09G08720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT036447 | 1e-154 | BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds. | |||
GenBank | KJ726911 | 1e-154 | KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611029.1 | 1e-161 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | Q67UE2 | 1e-162 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A0A0D9XEA7 | 0.0 | A0A0D9XEA7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G08720.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-65 | homeobox from Arabidopsis thaliana |