PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G06880.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 334aa    MW: 35166 Da    PI: 4.9767
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G06880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.99.8e-15101147354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  LPERR09G06880.1 101 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 147
                      78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.06698147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-12101147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.18E-14101150No hitNo description
SuperFamilySSF474591.31E-14102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-14102154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-14104153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.3E-5205252No hitNo description
Gene3DG3DSA:3.30.70.2603.4E-6205252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MWEGGGHEAA AAQLMPWFGT AASAFVADPA AAGFGFGFEA AVATAPVSRQ QRGGVAAAEE  60
EGLGGGGGKA VVSGLLGSLQ AELGRVTARE MMEAKALAAS RSHSEAERRR RQRINGHLAR  120
LRSLLPNTTK TDKASLLAEV IEHVKELKRQ TTAIAAAGNH HDDVDVDDED GMCRATSQQL  180
LPTEADELAV DAAVDGEGRL VVRASLCCED RPDLIPDIAR ALAALRLRAR RAEITTLGGR  240
VRSVLLITAD EHVGRGDDDV EEDDDDDEDE CTASHRRHEC IATVQEALRG VMDRRAAASS  300
DTSTSSGAAL AAGGGGSIKR QRMNYGGQDH QCSV
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G06880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-106CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651269.11e-117transcription factor bHLH30
TrEMBLA0A0D9XDM30.0A0A0D9XDM3_9ORYZ; Uncharacterized protein
STRINGLPERR09G06880.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-42bHLH family protein