PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G16620.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 441aa MW: 46992.2 Da PI: 6.5397

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G16620.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4e-05	256	275	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ LPERR08G16620.1 256 FSCPVCFKTFNRYNNMQMHM 275 89*****************9 PP
2	zf-C2H2	12.4	0.00046	342	362	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ LPERR08G16620.1 342 CRKCGKAFAVKGDWRTHEKNC 362 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.38	256	278	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.6E-6	256	275	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.64	256	283	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	258	278	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.85E-6	324	360	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.4E-5	327	360	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	82	340	360	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.621	340	360	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	366	389	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MEDTYTSFFK NPYYYYCTSA ASFPNPPSAA AGHLPPPLPS YSALYPAGGG AYHHHHHQSY 60 SYPAAAAAFF QPQPPPVIDT SPPSPPLREA LPLLSLSPTP ARHRSAAESD SDSDDGGGGG 120 CYLQQEVTAG STTTAAVSRA PLFADLNCVP SSCDGDGNDD DVIGGGDPMD VEAAVALRIG 180 LPAADLLSGI TGGGRIGGDH GENDDEEEED CKVGGGGGEE EEIVPLGFAT TPIGKLNKGQ 240 YWIPTPSQIL IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GVQPTAMLRL 300 PCYCCAAGCR NNIDHPRARP LKDFRTLQTH YKRKHGLKPF LCRKCGKAFA VKGDWRTHEK 360 NCGKLWYCLC GSEFKHKRSL KDHARAFGHG HSAGFSFDDD DDGAVSDIDQ HGGDSSSYGG 420 GGGAAAARAS MASSSSLQPR C

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MEDTYTSFFK NPYYYYCTSA ASFPNPPSAA AGHLPPPLPS YSALYPAGGG AYHHHHHQSY  60
SYPAAAAAFF QPQPPPVIDT SPPSPPLREA LPLLSLSPTP ARHRSAAESD SDSDDGGGGG  120
CYLQQEVTAG STTTAAVSRA PLFADLNCVP SSCDGDGNDD DVIGGGDPMD VEAAVALRIG  180
LPAADLLSGI TGGGRIGGDH GENDDEEEED CKVGGGGGEE EEIVPLGFAT TPIGKLNKGQ  240
YWIPTPSQIL IGPTQFSCPV CFKTFNRYNN MQMHMWGHGS QYRKGPESLR GVQPTAMLRL  300
PCYCCAAGCR NNIDHPRARP LKDFRTLQTH YKRKHGLKPF LCRKCGKAFA VKGDWRTHEK  360
NCGKLWYCLC GSEFKHKRSL KDHARAFGHG HSAGFSFDDD DDGAVSDIDQ HGGDSSSYGG  420
GGGAAAARAS MASSSSLQPR C

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G16620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287566	1e-161	AK287566.1 Oryza sativa Japonica Group cDNA, clone: J065027L04, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821697.1	1e-174	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-115	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0D9X9I5	0.0	A0A0D9X9I5_9ORYZ; Uncharacterized protein
STRING	LPERR08G16620.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-110	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]