PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR08G14440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 329aa MW: 34754 Da PI: 7.4718 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.1e-18 | 165 | 219 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k LPERR08G14440.1 165 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 219 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.5 | 2.7e-41 | 165 | 255 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk LPERR08G14440.1 165 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 255 69*************************************************************************************9.665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-18 | 147 | 219 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.63E-18 | 151 | 222 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 161 | 221 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-16 | 163 | 225 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.17E-17 | 165 | 222 | No hit | No description |
Pfam | PF00046 | 1.6E-15 | 165 | 219 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 196 | 219 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 9.2E-11 | 221 | 255 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 3.5E-25 | 221 | 264 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 329 aa Download sequence Send to blast |
MELGLSLGEA VAVPDGGRPE LVLGLGVGVG RGEDEVRRRE DAVVGARRWA AASPEPSVRL 60 SLVSSLALHW PSDTGGVEPA AARGFDVNRA PSVAAGMEDD EDGPGAAPAL SSSPNDSGGS 120 FPLDLSGHGG IRGGAGGEAP AAAAHGGGER SSSRASDDDE GASARKKLRL SKEQSAFLEE 180 SFKEHSTLNP KQKVALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCETLTEE 240 NRRLHKELAE LRALKTARPF YMHLPATTLS MCPSCERVAS NPATTSAPAV AASPERRPSS 300 FAALFSAPRG FPLAAGQPRP PPPPESNCL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 213 | 221 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR08G14440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK241196 | 0.0 | AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648883.1 | 1e-150 | homeobox-leucine zipper protein HOX27 isoform X2 | ||||
Swissprot | A2YW03 | 1e-152 | HOX27_ORYSI; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A0D9X8P6 | 0.0 | A0A0D9X8P6_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G14440.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06710.1 | 6e-70 | homeobox from Arabidopsis thaliana |