PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G14440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 329aa    MW: 34754 Da    PI: 7.4718
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G14440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.74.1e-18165219256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  LPERR08G14440.1 165 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 219
                      788899***********************************************98 PP

2HD-ZIP_I/II128.52.7e-41165255192
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  LPERR08G14440.1 165 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 255
                      69*************************************************************************************9.665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-18147219IPR009057Homeodomain-like
SuperFamilySSF466891.63E-18151222IPR009057Homeodomain-like
PROSITE profilePS5007117.167161221IPR001356Homeobox domain
SMARTSM003896.3E-16163225IPR001356Homeobox domain
CDDcd000863.17E-17165222No hitNo description
PfamPF000461.6E-15165219IPR001356Homeobox domain
PROSITE patternPS000270196219IPR017970Homeobox, conserved site
PfamPF021839.2E-11221255IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.5E-25221264IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MELGLSLGEA VAVPDGGRPE LVLGLGVGVG RGEDEVRRRE DAVVGARRWA AASPEPSVRL  60
SLVSSLALHW PSDTGGVEPA AARGFDVNRA PSVAAGMEDD EDGPGAAPAL SSSPNDSGGS  120
FPLDLSGHGG IRGGAGGEAP AAAAHGGGER SSSRASDDDE GASARKKLRL SKEQSAFLEE  180
SFKEHSTLNP KQKVALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCETLTEE  240
NRRLHKELAE LRALKTARPF YMHLPATTLS MCPSCERVAS NPATTSAPAV AASPERRPSS  300
FAALFSAPRG FPLAAGQPRP PPPPESNCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213221RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G14440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411960.0AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648883.11e-150homeobox-leucine zipper protein HOX27 isoform X2
SwissprotA2YW031e-152HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A0D9X8P60.0A0A0D9X8P6_9ORYZ; Uncharacterized protein
STRINGLPERR08G14440.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-70homeobox from Arabidopsis thaliana