PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G12910.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 321aa    MW: 33865 Da    PI: 6.0905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G12910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14116162354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  LPERR08G12910.1 116 RSHSEAERRRRQRINAHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 162
                      78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.142113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-12116162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-15116175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.11E-13116165No hitNo description
Gene3DG3DSA:4.10.280.101.8E-14117171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MWEGGGVVDH GHESLLLQAA AAAHGAGGDA SSLAPWFGPS SAAPPPYMPA PFAAAAELQP  60
AAEEDPFGVV GNHYQQHQYG GGGMLGMEMQ MGGGGGLLGR MTAKEIMDAK ALAASRSHSE  120
AERRRRQRIN AHLARLRSLL PNTTKTDKAS LLAEVIEHVK ELKRQTSASS SPAQMQLMPT  180
EADELLVEAT ASAEDDQEEG RPSVVVARAS LCCEDRAELI PDMARALAAL RLRARRAHFA  240
TLGGRLRSVL LIAALDDEDE EDDGAVAASR RRHELVASIH EALRGVMDGK VPAASSDTSS  300
SGGGGSIKRQ RMVSAHEQGS F
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G12910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096161e-91AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020402268.15e-98transcription factor bHLH30
TrEMBLA0A0D9X8520.0A0A0D9X852_9ORYZ; Uncharacterized protein
STRINGLPERR08G12910.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-39bHLH family protein