PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR08G10910.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NF-YB

Protein Properties

Length: 388aa MW: 43759.6 Da PI: 10.9164

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR08G10910.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	71.3	1.6e-22	11	98	3	90
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 ++d lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c re++kti+++ +l al +lGf +y+e++++ +++ LPERR08G10910.2 11 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQDLGFREYIEEVQMAYEQH 98 67999***************************************************************************99866555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.2E-38	8	142	IPR009072	Histone-fold
SuperFamily	SSF47113	2.62E-33	12	139	IPR009072	Histone-fold
Pfam	PF00808	4.1E-19	15	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE 60 VCSREDKKTI APEHVLRALQ DLGFREYIEE VQMAYEQHKN DTLDSPKASK FTGIEMTEEQ 120 AVAEQQRMFA EARARMNNGS QNMKRSSKHH SRHSLICTLN HSNPCSLKFS SILNHSSPHK 180 YSSTLNRSKL RSLNLSSTLN RSNHSCNRNL SSTCNPNYPR SCSRNLSSIR SHRSRHNLSS 240 ISNRSRNHSH RQSCNQWHNH KQNMAWTVAT RTLLGGREGR RPWRVARLSR MSTSPFSHLN 300 WMLSSSMISP HRRTNAAGIS APSAAVAELS SFPCIPTIVL NHIRRPRRPG KTRVSFLGPR 360 IVFTPPSGSH STSIPSALAL HTHTPSIS

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDPMDIVGKS KEDVSLPKST MFKIIKEMLP PDVRVARDAQ DLLVECCVEF INLLSSESNE  60
VCSREDKKTI APEHVLRALQ DLGFREYIEE VQMAYEQHKN DTLDSPKASK FTGIEMTEEQ  120
AVAEQQRMFA EARARMNNGS QNMKRSSKHH SRHSLICTLN HSNPCSLKFS SILNHSSPHK  180
YSSTLNRSKL RSLNLSSTLN RSNHSCNRNL SSTCNPNYPR SCSRNLSSIR SHRSRHNLSS  240
ISNRSRNHSH RQSCNQWHNH KQNMAWTVAT RTLLGGREGR RPWRVARLSR MSTSPFSHLN  300
WMLSSSMISP HRRTNAAGIS APSAAVAELS SFPCIPTIVL NHIRRPRRPG KTRVSFLGPR  360
IVFTPPSGSH STSIPSALAL HTHTPSIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	4e-31	12	133	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR08G10910.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT841564	0.0	CT841564.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104G12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9X7F4	0.0	A0A0D9X7F4_9ORYZ; Uncharacterized protein
STRING	LPERR08G10910.2	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5720	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	2e-76	nuclear factor Y, subunit B13