PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G04630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 412aa MW: 42383.6 Da PI: 6.8337 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00028 | 301 | 338 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++ L++l+ + +K + a++L +++eYIk L LPERR08G04630.1 301 RKEKLGDRVTALQQLVSPF-----GKTDTASVLHETIEYIKFL 338 5566666777788888776.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.96 | 289 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0023 | 295 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-4 | 298 | 342 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-11 | 298 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-8 | 299 | 360 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MADHQEMIHA ASPGSHGGDW WSAAAPPSCS APETMAGFGG WSSAAVIDGG GNASRSAAAG 60 NTTAESPGSN SLATGSSITF QEPAAGGGVA DPAAVHAQTV AGGGWNQQQT FLDGSGFHGY 120 MSSRTDHHAH HQMLNNTPSL MSHSSSNNSG VMLQDHHHHD QNYQFLSNLG FELLSSPTSP 180 YGGGGGGGFR SSLLRSLTEP AAAAAARPGS PGSLIQQYHY HQPPAMSLQP PAAGREPLQF 240 TNSTAPFWNP STGFAVAAEG TALGGAGASS AQPTTARLAA KSALEGVGDS SSIITKKAKV 300 RKEKLGDRVT ALQQLVSPFG KTDTASVLHE TIEYIKFLHD QVGALSAPYL KNRQQVPHLK 360 SSGDNDGGGG EATASKRDLT GRGLCLVPIS STFAVASETP VDFWTPFGAT FR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G04630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061283 | 7e-51 | BT061283.1 Zea mays full-length cDNA clone ZM_BFb0131G07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648821.1 | 0.0 | transcription factor bHLH112 isoform X2 | ||||
TrEMBL | A0A0D9X504 | 0.0 | A0A0D9X504_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G04630.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 3e-37 | bHLH family protein |