 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
LPERR08G03560.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
| Family |
LSD |
| Protein Properties |
Length: 143aa MW: 14792.3 Da PI: 7.9177 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| LPERR08G03560.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 44.2 | 3.2e-14 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr+lL+YP+GA+sV+Ca+C tV
LPERR08G03560.2 27 CSGCRNLLMYPAGATSVCCAVCSTV 51
***********************99 PP
|
| 2 | zf-LSD1 | 46.8 | 4.7e-15 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggC+tlL+Y rGA+sV+C++C+tV
LPERR08G03560.2 66 CGGCHTLLMYIRGATSVQCSCCHTV 90
************************9 PP
|
| 3 | zf-LSD1 | 41.9 | 1.6e-13 | 104 | 128 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+Cr lL+Y +GA+sV+Ca+C++V
LPERR08G03560.2 104 CGNCRMLLMYQYGARSVKCAVCNFV 128
***********************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009814 | Biological Process | defense response, incompatible interaction |
| GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response |
| GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response |
| GO:0045595 | Biological Process | regulation of cell differentiation |
| GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
| Sequence ? help Back to Top |
| Protein Sequence Length: 143 aa
Download sequence Send
to blast |
MPVPLAPYPT PPVPFTPPNG GQSQLVCSGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE 60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEANQVA HVNCGNCRML LMYQYGARSV 120
KCAVCNFVTS VGASPGTDQK PSS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ620676 | 0.0 | AJ620676.1 Oryza sativa Japonica Group mRNA for zinc finger protein, clone Z52. |
| GenBank | AK111759 | 0.0 | AK111759.1 Oryza sativa Japonica Group cDNA clone:J023055E16, full insert sequence. |
| GenBank | AY525368 | 0.0 | AY525368.1 Oryza sativa (japonica cultivar-group) zinc finger protein LSD1 mRNA, complete cds. |
| GenBank | CT832471 | 0.0 | CT832471.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA042K01, full insert sequence. |
| GenBank | CT832472 | 0.0 | CT832472.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027E05, full insert sequence. |
