PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR07G20790.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

C2H2

Protein Properties

Length: 621aa MW: 67692.3 Da PI: 4.211

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR07G20790.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00078	111	129	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 kC Cg++Fs++s+L H+ LPERR07G20790.1 111 KCWSCGQVFSSNSELCGHL 129 7***************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.9E-31	27	173	No hit	No description
Pfam	PF12756	6.3E-6	56	131	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	56	77	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.40.50.150	6.6E-38	254	414	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
PROSITE profile	PS51678	70.098	254	583	IPR025799	Protein arginine N-methyltransferase
SuperFamily	SSF53335	1.63E-61	260	568	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	1.85E-11	295	414	No hit	No description
Pfam	PF13649	2.9E-11	296	411	No hit	No description
Gene3D	G3DSA:2.70.160.11	4.0E-40	418	602	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006479	Biological Process	protein methylation
GO:0005829	Cellular Component	cytosol
GO:0008168	Molecular Function	methyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MATPESELPT KQELLGEEYE EDEDEEDGEE GWDDWESDGD DAAGGGGGGG GGGLLCLFCS 60 ERFGSESSLF SHCASEHKFD FYGVVKETTG MDFYGCIKFI NFVRSKVAEN KCWSCGQVFS 120 SNSELCGHLH ASEIPQPEGK VPWGDDLYLK PFMEDDSLLH SLSIFDDDDE EESCGMPVER 180 GECSTGNGTL AETCESNLKS IIDDDSDVVG KFEKACTVES KDGECSGSLA QDPSDKQLKI 240 ARASAAARGI KSVDDSYFGS YSSFGIHREM LGDKVRTEAY RDALLCNPSL MNGATVLDVG 300 CGTGILSLFA AKAGASRVIA VDGSAKMVSV ATQVAKNNGF LYDENMEMEQ KRDTQVISVV 360 HTKAEELNHK IQVPSNRFDV LVSEWMGYCL LYESMLSSVL YARDHFLKPG GAILPDTATI 420 FGAGFGKGGT SLPFWENVYD FDMSCIGKEV TGNSAKFPVV DILASEDIVT ETAVLHSFDL 480 ATMKENEMDF TSSFELRLSE SGSSQSGVTW CYGIVLWFDT GFTSRFCKER PVNLTTSPFS 540 TPTHWSQTIF TFEEPIAMTK EGCVVGSSES VGTDDCPAVM IRSRISIVRA SEHRSIDISI 600 ETTGISSDGR KRSWPVQIFN L

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MATPESELPT KQELLGEEYE EDEDEEDGEE GWDDWESDGD DAAGGGGGGG GGGLLCLFCS  60
ERFGSESSLF SHCASEHKFD FYGVVKETTG MDFYGCIKFI NFVRSKVAEN KCWSCGQVFS  120
SNSELCGHLH ASEIPQPEGK VPWGDDLYLK PFMEDDSLLH SLSIFDDDDE EESCGMPVER  180
GECSTGNGTL AETCESNLKS IIDDDSDVVG KFEKACTVES KDGECSGSLA QDPSDKQLKI  240
ARASAAARGI KSVDDSYFGS YSSFGIHREM LGDKVRTEAY RDALLCNPSL MNGATVLDVG  300
CGTGILSLFA AKAGASRVIA VDGSAKMVSV ATQVAKNNGF LYDENMEMEQ KRDTQVISVV  360
HTKAEELNHK IQVPSNRFDV LVSEWMGYCL LYESMLSSVL YARDHFLKPG GAILPDTATI  420
FGAGFGKGGT SLPFWENVYD FDMSCIGKEV TGNSAKFPVV DILASEDIVT ETAVLHSFDL  480
ATMKENEMDF TSSFELRLSE SGSSQSGVTW CYGIVLWFDT GFTSRFCKER PVNLTTSPFS  540
TPTHWSQTIF TFEEPIAMTK EGCVVGSSES VGTDDCPAVM IRSRISIVRA SEHRSIDISI  600
ETTGISSDGR KRSWPVQIFN L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6nt2_A	3e-63	255	558	51	325	Protein arginine N-methyltransferase 1
6nt2_B	3e-63	255	558	51	325	Protein arginine N-methyltransferase 1
6nt2_C	3e-63	255	558	51	325	Protein arginine N-methyltransferase 1
6nt2_D	3e-63	255	558	51	325	Protein arginine N-methyltransferase 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Methylates (mono and asymmetric dimethylation) the guanidino nitrogens of arginyl residues in some proteins. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR07G20790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK105489	0.0	AK105489.1 Oryza sativa Japonica Group cDNA clone:001-127-B11, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006658026.1	0.0	PREDICTED: probable protein arginine N-methyltransferase 3
Refseq	XP_015647334.1	0.0	probable protein arginine N-methyltransferase 3
Swissprot	A3BMN9	0.0	ANM3_ORYSJ; Probable protein arginine N-methyltransferase 3
TrEMBL	A0A0D9X216	0.0	A0A0D9X216_9ORYZ; Uncharacterized protein
STRING	LPERR07G20790.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7895	9	9

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]