PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G17840.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 284aa    MW: 31245.9 Da    PI: 5.3588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G17840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.6e-102012411055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  LPERR07G17840.1 201 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 241
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14192257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12196253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-12200245No hitNo description
PfamPF000108.0E-8201241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAQFLGAHGD HCFAYEQVDE SMEAMAAMIL PSLDTDSNSS SSCLNYDMPP QCWPQHGHSS  60
SVTSFPDPVN SYESFEYPVM DPFPLTDFDA HCAIPYLADD LSPLHGNHPS ERVEEEAKVA  120
PMATKRKSNA AMTASKKSKK AGKKDSIGSD EGGNAYIDTQ SSSSCTSEEG NMEGNAKSSL  180
KKTGTRANRG AATDPQSLYA RKRRERINER LRILQNLVPN GTKVDISTML EEAVQYVKFL  240
QLQIKLLSSD DMWMYAPIAY NGVNISNIDL NFSAKINITS HIQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G17840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039851e-130AP003985.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1047_C01.
GenBankAP0051491e-130AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149631e-130AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-130CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646227.11e-173transcription factor bHLH54
TrEMBLA0A0D9X1000.0A0A0D9X100_9ORYZ; Uncharacterized protein
STRINGLPERR07G17840.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.16e-38root hair defective 6-like 4