PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G16410.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family GRAS
Protein Properties Length: 448aa    MW: 48355.7 Da    PI: 5.0659
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G16410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.26.1e-110644282374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lLl+cAeav+ ++l +a+ lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ +  +s +   a+++++ +sP++kfsh
  LPERR07G16410.1  64 LSLLLRCAEAVAMDQLPQARDLLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRISCAFQAYNALSPLVKFSH 157
                      689******************************************************************999********************** PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      +taNqaIl+av+ge+rvH+iD+di+qGlQWp L++ LasRp +p s+R+Tg+g+    s + l++tg+rLa+fA++lg+pfef+++  k  +  
  LPERR07G16410.1 158 FTANQAILQAVDGEDRVHVIDLDIMQGLQWPGLFHILASRPTKPRSVRLTGLGA----SLDVLQATGRRLADFAASLGLPFEFRPIEGKIGHVA 247
                      ******************************************************....9**************************866666666 PP

             GRAS 190 eleeL....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      +  +L      +++Ea++V++++  h l+d ++s +      ++l++sl+Pk++++veq++ h s++Fl rf+eal+yysalfd+l  ++++++
  LPERR07G16410.1 248 DAAALlgdgGEEEEEATVVHWMH--HCLYDVTGSDAG----AVRLLRSLRPKLITIVEQDLGH-SGDFLGRFVEALHYYSALFDALGDGAGAAA 334
                      8888856555666*********9..888888888888....**********************.899*******************9999**** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      eer+ vEr+llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l  + a+qa+lll +++++gy++ ee+g l lgWkd +L+++S+W
  LPERR07G16410.1 335 EERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVTLAGSPAAQARLLLGMYPWKGYTLVEEDGFLKLGWKDLSLLTASSW 427
                      *************************998887.9************************************************************* PP

             GRAS 374 r 374
                      +
  LPERR07G16410.1 428 E 428
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.31637408IPR005202Transcription factor GRAS
PfamPF035142.1E-10764428IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MLQGVLSRAL AADAMKSKRA AADEEEEEEG GERARGKRLA AEGIKAGDHQ EEDAAAETRG  60
LRLLSLLLRC AEAVAMDQLP QARDLLPEIA ELASPFGSSP ERVAAYFGDA LCARVLSSYL  120
GAYSPLALRP LAAAQSRRIS CAFQAYNALS PLVKFSHFTA NQAILQAVDG EDRVHVIDLD  180
IMQGLQWPGL FHILASRPTK PRSVRLTGLG ASLDVLQATG RRLADFAASL GLPFEFRPIE  240
GKIGHVADAA ALLGDGGEEE EEATVVHWMH HCLYDVTGSD AGAVRLLRSL RPKLITIVEQ  300
DLGHSGDFLG RFVEALHYYS ALFDALGDGA GAAAEERHAV ERQLLGAEIR NIVAVGGPKR  360
TGEVRVERWG DELRRAGFRP VTLAGSPAAQ ARLLLGMYPW KGYTLVEEDG FLKLGWKDLS  420
LLTASSWEPT DADDIAVAGD DRHESHDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1576942925380Protein SCARECROW
5b3h_A1e-1576942924379Protein SCARECROW
5b3h_D1e-1576942924379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G16410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200232.10.0scarecrow-like protein 23 isoform X1
SwissprotQ9FHZ11e-169SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A0D9X0G50.0A0A0D9X0G5_9ORYZ; Uncharacterized protein
STRINGLPERR07G16410.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-150GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]