PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G08550.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 1314aa    MW: 147978 Da    PI: 7.2786
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G08550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B393.31.7e-2986175185
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+kvltpsdv+k++rlv+pk++ae++       + e+++ l++ed+ g++W+++++y+++s++yv+tkGW++Fv++n L++gD+v F++ 
  LPERR07G08550.1  86 FDKVLTPSDVGKLNRLVIPKHHAEKFfpldaAAVAERGVVLSFEDPAGKEWRFRYSYWNSSQSYVMTKGWSRFVRQNSLDAGDTVSFQRG 175
                      89****************************988899****************************************************54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-3777178IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-3083178IPR015300DNA-binding pseudobarrel domain
CDDcd100178.17E-2784174No hitNo description
PfamPF023629.1E-2786180IPR003340B3 DNA binding domain
PROSITE profilePS5086314.7286190IPR003340B3 DNA binding domain
SMARTSM010199.9E-2486188IPR003340B3 DNA binding domain
SuperFamilySSF520586.23E-32416621IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.104.7E-26417595IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525403.44E-39614859IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.4E-6635686IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009319.8E-36640886IPR002182NB-ARC
PRINTSPR003642.7E-12641656No hitNo description
CDDcd000090.00627641724No hitNo description
PRINTSPR003642.7E-12710724No hitNo description
PRINTSPR003642.7E-12806820No hitNo description
SuperFamilySSF520581.43E-369231290IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.2E-1410021173IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.0E-811741289IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003642.7E-1212561272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1314 aa     Download sequence    Send to blast
MWRSWISLKS ARAGNTSGGY RAEGEQQERA GEVADDRERA SPHTSGSGRL KLAPDQLSDP  60
DQQDSAVGIE PAQQAAAMAV EKEHLFDKVL TPSDVGKLNR LVIPKHHAEK FFPLDAAAVA  120
ERGVVLSFED PAGKEWRFRY SYWNSSQSYV MTKGWSRFVR QNSLDAGDTV SFQRGASDAT  180
RDRLFIHSIP SPTHRHRLMP GLRLPRMLTV LVPPSRHSLL KSSEMYPKHP PAVPDDPPSW  240
PSSVTPRSPI NHLFHLLVRV RAVVSSFGQG GPPRPNHAML AKSNDFTYQA QYCLQDLHYY  300
SLLALMGSKN QSRFPCGVEE KIRDTIPTLD AVIQSLSKQS SAPVRQSNVV AVEGTHFILL  360
CRGVLGIMGI LCSDNINQEA DRFSAFDDHN YSVHDKITKR NEQTMPSSLS DPIYLLPTAI  420
RNLLYLDLSN CSHLVQLPPS LGLLHNLSAL NLSSCHSLHA LPDSLGYMYN LQILLLSFCH  480
KLHSLPASLG YLVYLRLLDL SGCCSLEILP DSSVNLCNLE NLNLSDCIRL KDVPQPFGNL  540
RKLEYLNLSG CHRVDINVDC LRTLVNLKCL TLSDHTNITD LPYSFPELTR HLDLSRWWKN  600
NWVHTQCNLK SYRCHQQSII NRILSVCSGE GDITSEQCLT SICIVGESGI GKTELLHEIY  660
NDEKVLEGFH RRIWINMHDK KKLLEITEFT TCAYFYDAPS SILEATVREE LNGKRFLLVL  720
DDVDIQNPCF WSDVWKLANV GAVGSTLIVT TRSKEVAKLF GAMQTYYLGS LSREECFMVF  780
QKHAIGGDID NHPQLKEIGW KIVERGGGNP LCVKALSGLL CHSETSLSEI DSLVSGILPA  840
LRLCYDLLPS RLKQCFKFCS LFPKDYVYVR HHAVQLWISQ GFIYPEEESQ PEDTGLKYFD  900
ELFCRSFFRH CPFSNDNEDK FVVHELFHDL ACSVSKDECF SSKEPFCSLT ENICHLSLLR  960
SDSNSVVLTK ELRHLQSLMV VRRSASEYSS LFEPPLKILG LNNLLMRCGF LRVLNLSCTT  1020
IVGLPSFVGN MKHLRFLALN NTKIKSLPAE IGQLDTLQTL ELKDCCCLTE LPESTNNLMK  1080
LRHLDVRKEP GNVHVGMPSG LGKLTDLQTL TVLNIGVSIT IEDCQDCNEI PYLGDLPSLK  1140
YLFIQKMCTV ESFGQRSNYL TTEVKHAPRF PSLEILNLWE MYSLQFWNET NKGDFPRLRH  1200
LCISRCPKLS NLPPLISLLY LSFYFGDQLP ALSELPSLKS MKIEGFQKLK SVRFCTEMPM  1260
LHKLEISDCK ELISIDAPFL SVSNLKVVRC PKLHFGGSSL EAVLCGKGFK GTPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-49811863108B3 domain-containing transcription factor NGA1
5os9_B3e-49811863108B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G08550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644837.10.0uncharacterized protein LOC4342906 isoform X1
TrEMBLA0A0D9WXL60.0A0A0D9WXL6_9ORYZ; Uncharacterized protein
STRINGLPERR07G08550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125771216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-47B3 family protein