PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G20530.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 638aa    MW: 70269.3 Da    PI: 7.1209
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G20530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-0695115526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f   G+C+ G++C++ H+
  LPERR06G20530.1  95 ECNMFKM-GFCPNGPNCRYKHV 115
                      6776666.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5023663IPR000571Zinc finger, CCCH-type
SMARTSM003568.2E-63662IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-63761IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-53763IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.7756489IPR000571Zinc finger, CCCH-type
SMARTSM003560.0156490IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.15990117IPR000571Zinc finger, CCCH-type
SMARTSM003560.00292116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-496114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5088257.224232367IPR007275YTH domain
PfamPF041463.2E-44232366IPR007275YTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MDDGDLSFDF EGGLDQVPAA AGGGGGGHGR GRGRGSYRQT VCRHWLRGLC MKGDSCGFLH  60
QFDKARMPVC RFFRDFGECR EPDCSYKHSY DDVKECNMFK MGFCPNGPNC RYKHVKLPGP  120
PPPVEEVMQK ILQIRSFNKF NQHRHNNYNQ QGDRPQHPQG SGLPNQNSVD NTTTTTAQPA  180
VGQQAQTTNQ QPAQQQQQQQ QKPNTNGQVQ TVPNGSSNQA TRIATPLPQG PSRYFIVKSC  240
NKENLEISVQ QGIWATQRSN EAKLNEAFES IENVILIFSI NRTRNFQGCA KMTSRIGGYI  300
GGGNWKSAHG TAHYGRNFSI QWLKLCELSF QKTHHLRNPY NDNLPVKISR DCQELEPFIG  360
EQLASLLYLE PDSEMTAILI AAEAKREEEK AKGVSADDGT DNQDIVLFDD NEEEEEEESE  420
EEEEGNGQES QGRGRGRGMM WPPQMPMLRG VGPMMGGRGF PPNMMGDGFG FGGGFGMPDP  480
FGVPRGFPPF GGPRFPGDFA RGGPMPGMVF PGRPPQPGGM FPMGLDMMMG PGRGPLMGGM  540
GMGGPGRPNR PVGMPPFMPP PPPQNNRGMK REQRRPAGER GDRYETTSDQ GSRGHDATGN  600
SGAEGTRSQS GDRYGRSALR DDDSESDEDA APRRSRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zuu_A1e-100217395218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_B1e-100217395218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_C1e-100217395218030-kDa cleavage and polyadenylation specificity factor 30
5zuu_D1e-100217395218030-kDa cleavage and polyadenylation specificity factor 30
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G20530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644405.10.0zinc finger CCCH domain-containing protein 45
SwissprotQ0DA500.0C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLA0A0D9WT890.0A0A0D9WT89_9ORYZ; Uncharacterized protein
STRINGLPERR06G20530.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428