PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G19770.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family SBP
Protein Properties Length: 337aa    MW: 36460.5 Da    PI: 8.4972
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G19770.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP114.65.6e-3656133178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +CqvegC a+l   key+r+h+vCe h+k+  v v+g+ +rfCqqCsrfh+ sefD++krsCrrrL++hn+rrrk+q+
  LPERR06G19770.3  56 RCQVEGCGAELGVYKEYYRKHRVCEPHTKCLLVRVAGVDRRFCQQCSRFHAPSEFDQQKRSCRRRLSDHNARRRKPQT 133
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-2750118IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.35954131IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.28E-3555137IPR004333Transcription factor, SBP-box
PfamPF031103.3E-2857130IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MPAPSSSSSP SPSPLLWDWD ATGCEAAAGK RGKRGRHHGV GGSSSSAAAG GGEAARCQVE  60
GCGAELGVYK EYYRKHRVCE PHTKCLLVRV AGVDRRFCQQ CSRFHAPSEF DQQKRSCRRR  120
LSDHNARRRK PQTDVFAFGS GTLPRSLFDD RQQISFTWDK APPSHANTIS NSSWTSDLQL  180
SQVMDIGKGL PKAGAESGNI HLSKSSSSNA FPTLCHDTNE LLPIKGADAS ETASKSDGAL  240
DVKRALSLLS ASSWGLTDPG NQTSSIIRFT NSNQNSRLSS VPNEGNSNVP FQVDGQPLAL  300
EPQMFQFTMD AGNTTFPDVE RIKPAYESSL FGMNQIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-22571301184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G19770.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657223.11e-169PREDICTED: squamosa promoter-binding-like protein 11
SwissprotQ653Z51e-167SPL11_ORYSJ; Squamosa promoter-binding-like protein 11
TrEMBLA0A0D9WSY20.0A0A0D9WSY2_9ORYZ; Uncharacterized protein
STRINGLPERR06G19770.30.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62712952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.43e-35squamosa promoter binding protein-like 10