PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G14980.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 282aa    MW: 29717.2 Da    PI: 6.6822
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G14980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.64e-33161072102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k+y+++ed+ ++ +i w + +nsf+v d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll+
  LPERR06G14980.1  16 FVWKTYRMVEDPGTDGVIGWGKGNNSFIVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTHLLR 100
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+ s
  LPERR06G14980.1 101 NIVRRGS 107
                      ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5112105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3713105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-3313105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2816105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-171639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-175466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-176779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAMAAAAGGG GGAAPFVWKT YRMVEDPGTD GVIGWGKGNN SFIVADPFVF SQTLLPAHFK  60
HNNFSSFVRQ LNTYGFRKVD PDRWEFAHAS FLRGQTHLLR NIVRRGSAAA NGGGGGGGAA  120
VKRRDTSVDN GDEDMTMVAT EVVRLKQEQR TIDDRVAAMW RRVQETERRP KQMLTFLLKV  180
VGDCDRLHRL VGAGGNGGNG SAAAVDDNLF AVDDASPTAG GEKRARLLLD GDNTPGGGAF  240
GPDAVDFAGF YTGADMFTDV AAVDAAGAGA GCSFAFGVNT GY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-25110514129Heat shock factor protein 1
5d5v_B5e-25110514129Heat shock factor protein 1
5d5v_D5e-25110514129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G14980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036821e-130AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149621e-130AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641665.11e-131heat stress transcription factor C-2b
SwissprotQ0DBL61e-132HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A0D9WR490.0A0A0D9WR49_9ORYZ; Uncharacterized protein
STRINGLPERR06G14980.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-59heat shock transcription factor C1