PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR06G04980.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 433aa MW: 42818.3 Da PI: 5.2476

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR06G04980.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.1	1.8e-09	223	266	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + E RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq LPERR06G04980.1 223 MTESLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 266 67999****************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.551	216	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.83E-10	222	270	No hit	No description
SuperFamily	SSF47459	2.22E-13	222	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.9E-10	222	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-12	223	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	224	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MQPSSRDTAG AGAGDGGAQD DFFDQMLSTL PSAWADLGGG GAAGKSPWEI AAAGGEVDPS 60 AAQVFDESAL LASRLRQHQI GGGGVGGEKP VMLQLSDLHR QASGGGEEDG GGGAFSPLPL 120 FTDRTNVPPR EEIDGGGGGG FKSPNATGGG DHAMFNGFGV QPPFGQGGSM SGQSFGGGGT 180 AASGGTAPVS EEGRRRRGSS GCARGEGKPP THTASPNTRL LTMTESLRRE RIAERMKSLQ 240 ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA AGMAPLVASM SSEGNSNGSG 300 NGGGGKASKV NNGGEGGGGG SGGGMRVTEQ QVAKMMEEDM GTAMQYLQGK GLCLMPISLA 360 SAISSATSSA SLLSRPAIRH TAPPQMLDAA AAVAGCGGPA SPAGMSNGNA AAAAGVGDDA 420 RHAQDGGAGG GTQ

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MQPSSRDTAG AGAGDGGAQD DFFDQMLSTL PSAWADLGGG GAAGKSPWEI AAAGGEVDPS  60
AAQVFDESAL LASRLRQHQI GGGGVGGEKP VMLQLSDLHR QASGGGEEDG GGGAFSPLPL  120
FTDRTNVPPR EEIDGGGGGG FKSPNATGGG DHAMFNGFGV QPPFGQGGSM SGQSFGGGGT  180
AASGGTAPVS EEGRRRRGSS GCARGEGKPP THTASPNTRL LTMTESLRRE RIAERMKSLQ  240
ELVPNANKTD KASMLDEIID YVKFLQLQVK VLSMSRLGGA AGMAPLVASM SSEGNSNGSG  300
NGGGGKASKV NNGGEGGGGG SGGGMRVTEQ QVAKMMEEDM GTAMQYLQGK GLCLMPISLA  360
SAISSATSSA SLLSRPAIRH TAPPQMLDAA AAVAGCGGPA SPAGMSNGNA AAAAGVGDDA  420
RHAQDGGAGG GTQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR06G04980.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642979.1	1e-149	transcription factor bHLH66
TrEMBL	A0A0D9WMM6	0.0	A0A0D9WMM6_9ORYZ; Uncharacterized protein
STRING	LPERR06G04980.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	4e-45	LJRHL1-like 3