PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G03910.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 314aa    MW: 34203.5 Da    PI: 7.4495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G03910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.5e-16105151455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  E+rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  LPERR06G03910.1 105 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 151
                      6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.79E-1897155No hitNo description
Gene3DG3DSA:4.10.280.101.7E-2098161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-2098161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.076101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-14105151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-18107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDMDEHGRHA LLLLQQQQRR RREQQQQQEM EEEEEARRQM FGAMVGGGLA AFPSSAQGMV  60
DCGGEGGFCD SEAGGSSEPE QQPAEAAAAR PRGGSGSKRS RAAEVHNLSE KRRRSKINEK  120
MKALQSLIPN SNKTDKASML DEAIEYLKQL QLQVQMLSMR NGVYLNPSYL SGALEPAQAS  180
QMFAALGGSN VTVAHPGTVM PPVNQSSGAH HLFDPLNSPS QNQPPSLILP SVPSTAIPEP  240
PFHLESSQSH LRPFQLPGSS EMVFHGEMMP KHHLASHQES LPAKSNHRTR YQKVQDMLSL  300
GRGCLALKSG AKEG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G03910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881998.11e-148LOW QUALITY PROTEIN: transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
TrEMBLA0A0D9WM930.0A0A0D9WM93_9ORYZ; Uncharacterized protein
STRINGLPERR06G03910.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.19e-35bHLH family protein