PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G00060.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 688aa    MW: 75625 Da    PI: 5.1845
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G00060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1531.4e-47191471128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp+GfrF+Ptd elv +yLk+k++g++++    i++vd+  +ePwdLp k  +k+++ ew+fF++rd ky+ g+r+nr+t++gyWkatgkd+ +
  LPERR06G00060.1  19 LPVGFRFRPTDVELVRHYLKAKIAGRTHPDLLLIPDVDLSACEPWDLPsKsLIKSDDPEWFFFAPRDPKYPGGHRSNRSTAAGYWKATGKDRLI 112
                      79*************************999889**************96346777888************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +  g+l+g+kktLvf++grap+g++t W+mheyr+
  LPERR06G00060.1 113 RH-AGALIGIKKTLVFHRGRAPRGHRTAWIMHEYRA 147
                      *9.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5412168IPR003441NAC domain
PROSITE profilePS5100552.94119168IPR003441NAC domain
PfamPF023658.7E-2620146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MMKAGGNSVS GEAAAEAVLP VGFRFRPTDV ELVRHYLKAK IAGRTHPDLL LIPDVDLSAC  60
EPWDLPSKSL IKSDDPEWFF FAPRDPKYPG GHRSNRSTAA GYWKATGKDR LIRHAGALIG  120
IKKTLVFHRG RAPRGHRTAW IMHEYRATEP NFQSGQNGSF VLYRLFNKHE QQDDTQEQQL  180
HSMAPSTSSP GNPHNNTVSV QAGLASVMKD ETVPLSDLSQ LTEIQNVTDD ADRSMAHLLT  240
SVDGKDQTKT HDDDFLGMLY QLPDLEPEQS YSGFPNITSP MRPYSDNPFV SNLGGQELSA  300
HFGSIISEQD LHSLLLSPNS TIMDKHPIGH AETNPAMLTN NSNSNALLVD NWRDNDSYQM  360
LPIQRADDTD AACCSSSINA PQTETGSANL EVRAQSGMVY CGVSQSSHLC NQYQLQSTLN  420
PHTESQMSGS FCLAGSRVPY PQHWFSTMVE PGGSSMTFSN ALKEQGQEPP PSIQQLAVQD  480
LVDPQQGTAA RRIRLVCSVQ RASISQPVST SQLQTEYEAG SCCNTCSSSD NNKENVESED  540
EAGSCCTTGS SSDNHNEENA ISASQTMDGE PMHIQCNGNT PIQVDPTMEV TDKLQGFSFH  600
EEILSHADQP RGTNLKKRFR LEYTNRAEEN APGEPSLETR RHQTIRSSVV PMLWCALFVM  660
GPLLLLVGVW KSLKSLPDPD VNDQLGPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-44121718171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G00060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642953.10.0NAC domain-containing protein 7
TrEMBLA0A0D9WKP70.0A0A0D9WKP7_9ORYZ; Uncharacterized protein
STRINGLPERR06G00060.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.38e-64NAC transcription factor-like 9