PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G18690.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 486aa    MW: 54333.3 Da    PI: 7.1042
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G18690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM929.7e-29251592128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka...eekewyfFskrdkkyatgkrknratk..sgyWk.atgk 88 
                      p+GfrF+P++ e+v +yL ++++g+++  + +i   ++y++eP++L  +k+k+   +e+ewyf s+rd+ky++g+r++r t+   g+Wk +tgk
  LPERR05G18690.1  25 PVGFRFKPREAEVVEYYLVPRLQGSRIVPNPAIVVNNVYQFEPERLIkEKCKGwigDEEEWYFLSPRDRKYKNGSRPSRNTEdrVGRWKaSTGK 118
                      89************************988788**9***********7344444565788********************8876689***55777 PP

              NAM  89 ..dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +k++++ +g++    ++Lv++kg  ++ +kt+W+m ey++
  LPERR05G18690.1 119 taSKTMIC-SGTTRFFVTSLVYFKGPVKTETKTKWLMREYTI 159
                      32233334.889999**********99999**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-2923161IPR003441NAC domain
PROSITE profilePS5100531.38924204IPR003441NAC domain
PfamPF023654.7E-1625159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MAELEKGKQI VADSGGDGGG EKRRPVGFRF KPREAEVVEY YLVPRLQGSR IVPNPAIVVN  60
NVYQFEPERL IKEKCKGWIG DEEEWYFLSP RDRKYKNGSR PSRNTEDRVG RWKASTGKTA  120
SKTMICSGTT RFFVTSLVYF KGPVKTETKT KWLMREYTIP LFENKLDKSG ASTSTSSDSG  180
KEEEEEDVEE EEDGWVAACA LFELEPDAAE ISDKQAGKRP ISESSAAAAA AQKTKRPFVP  240
PPAPVIAGPR GVVEQYQPIY PMQPRPPQPQ PMMMMNKNNC PQFQLMMQGN NGMMQPSMCN  300
FRPAPAPASA YNGHRQQQPA AAAAAMQQGF RPVFTPHAQM QQQRRPIQLI GQALAAPVSN  360
NYHMPPLQQQ QPVQRGPIQY RGQAAPVSNN FHTQQQQPVQ WGSIQYRGQV APVSNNFHAP  420
PAPQQQPVQL LPVHQMQWGS VQQQQPQPEN DDVTLDPEFE AMLLKELENM AEEEVAFQPF  480
AGDGGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-20171598140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G18690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WIN20.0A0A0D9WIN2_9ORYZ; Uncharacterized protein
STRINGLPERR05G18690.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143612024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.24e-20NAC domain containing protein 35