PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR05G15380.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YB
Protein Properties Length: 190aa    MW: 19896.3 Da    PI: 7.6206
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR05G15380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.91.1e-5632125194
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdrflPian+srimkk++Pan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplkvyl+kyre +
  LPERR05G15380.1  32 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREGD 125
                      69*****************************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-5331131IPR009072Histone-fold
SuperFamilySSF471134.5E-3935126IPR009072Histone-fold
PfamPF008082.6E-2838102IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.4E-226684No hitNo description
PROSITE patternPS0068506985IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.4E-2285103No hitNo description
PRINTSPR006151.4E-22104122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MADGPASPGG GGGSHESGSP RGGGGGGGGG GVREQDRFLP IANISRIMKK AIPANGKIAK  60
DAKETVQECV SEFISFITSE ASDKCQREKR KTINGDDLLW AMATLGFEDY IEPLKVYLQK  120
YREGDSKLTA KTGDGSVKKD VLGSHGGGSN SSAGMGQQGV YNQGMGYMQP QSLASILHLM  180
VSSEGTYHHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A5e-5031123193NF-YB
4awl_B5e-5031123294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A5e-5031123294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR05G15380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1008111e-178AK100811.1 Oryza sativa Japonica Group cDNA clone:J023121O11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302548.12e-92nuclear transcription factor Y subunit B
SwissprotP252092e-90NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBLA0A0D9WHF61e-136A0A0D9WHF6_9ORYZ; Uncharacterized protein
STRINGLPERR05G15380.11e-137(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.78e-67nuclear factor Y, subunit B1
Publications ? help Back to Top
  1. Li XY, et al.
    Evolutionary variation of the CCAAT-binding transcription factor NF-Y.
    Nucleic Acids Res., 1992. 20(5): p. 1087-91
    [PMID:1549471]