PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G21690.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 755aa    MW: 81529.1 Da    PI: 5.6291
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G21690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.4e-2093149157
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  LPERR04G21690.1  93 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 149
                      688999************************************************995 PP
2START204.25.2e-642865081206
                      HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakae 80 
                      ela +a++elv++a+++ep+W++ +      e ++++e+ + f+++ +      ++ea+r+s+vv+m++a lve+l+d ++    +++ + +a 
  LPERR04G21690.1 286 ELAVAAMEELVRMAQLDEPLWSSPAaspaamETLDEEEYARMFPRGLGpkqygLRSEASRDSAVVIMTHASLVEILMDANQyaaVFSNIVSRAV 379
                      57899******************9977888888888888888877766********************************66666666666*** PP

                      EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
            START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                      tlev+s+g      galq+m+ e+q++splvp R+++fvRy++q  +g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skvtwv
  LPERR04G21690.1 380 TLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKVTWV 469
                      **************************************************************98....7************************* PP

                      E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      ehv++++r++h++++ lv+sgla+ga++w  tl+rqce+
  LPERR04G21690.1 470 EHVEVDDRSVHNIYKLLVNSGLAFGARRWIGTLDRQCER 508
                      *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-2273148IPR009057Homeodomain-like
SuperFamilySSF466896.68E-2080150IPR009057Homeodomain-like
PROSITE profilePS5007117.10390150IPR001356Homeobox domain
SMARTSM003895.1E-2091154IPR001356Homeobox domain
CDDcd000861.77E-1992151No hitNo description
PfamPF000468.6E-1893148IPR001356Homeobox domain
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PROSITE profilePS5084841.633277511IPR002913START domain
SuperFamilySSF559611.92E-34278510No hitNo description
CDDcd088758.08E-121281507No hitNo description
SMARTSM002345.9E-59286508IPR002913START domain
PfamPF018522.7E-54287508IPR002913START domain
Gene3DG3DSA:3.30.530.204.5E-6349506IPR023393START-like domain
SuperFamilySSF559611.32E-12529745No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MPSMIGRNGA AYGSSSALSL SQPNLLDNHQ FQQAFQQQHL LDQIPATTAE SGDNMIRSRA  60
SDPLGDEFES KSGSENVDGI SVDDQDPNQR PRKKRYHRHT QHQIQEMESF FKECPHPDDK  120
QRKELSRELG LEPLQVKFWF QNKRTQMKNQ HERHENSQLR SENEKLRAEN MRYKEALSSA  180
SCPNCGGPAA LGEMSFDEHH LRLENARLRD EIDRISAIAA KYVGKPMLPF PVLSNPMAAA  240
AATTFGAGAV VPAAADMFVG GGGGGGGELL RGVHSSSDVD KPMIVELAVA AMEELVRMAQ  300
LDEPLWSSPA ASPAAMETLD EEEYARMFPR GLGPKQYGLR SEASRDSAVV IMTHASLVEI  360
LMDANQYAAV FSNIVSRAVT LEVLSTGVAG NYNGALQVMS VEFQVPSPLV PTRESYFVRY  420
CKQNADGTWA VVDVSLDSLR PSPVLKCRRR PSGCLIQEMP NGYSKVTWVE HVEVDDRSVH  480
NIYKLLVNSG LAFGARRWIG TLDRQCERLA SVMASNIPTS DIGVITSAEG RKSMLKLAER  540
MVMSFCGGVT ASVAHQWTTL SGSGAEDVRV MTRKSVDDPG RPPGIVLNAA TSFWLPWDIL  600
SNGGIVQEMA HIANGRDQGN CVSLLRVNSS NSNQSNMLIL QESCTDASGS YVIYAPVDVV  660
AMNVVLNGGD PDYVALLPSG FAILPDGPSA NSHAVAEGAV GVGSGGSLLT VAFQILVDSV  720
PTAKLSLGSV ATVNSLIACT VERIKAAVSG DSNPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G21690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1015630.0AK101563.1 Oryza sativa Japonica Group cDNA clone:J033050E18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636338.10.0homeobox-leucine zipper protein ROC2 isoform X1
RefseqXP_015636339.10.0homeobox-leucine zipper protein ROC2 isoform X1
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A0D9W9U80.0A0A0D9W9U8_9ORYZ; Uncharacterized protein
STRINGLPERR04G21690.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]