PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G17100.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C2H2
Protein Properties Length: 574aa    MW: 59937.3 Da    PI: 6.2909
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G17100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-05116133219
                      EETTTTEEESSHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                      +C++Cgk F++++++  H
  LPERR04G17100.1 116 VCKNCGKEFTSWEHFLEH 133
                      7**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.962446IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.5362446IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-62446No hitNo description
PfamPF139120.00472546IPR007087Zinc finger, C2H2
PROSITE patternPS0002802646IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-6110134No hitNo description
SMARTSM00355140115135IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723115142IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-7272295No hitNo description
SMARTSM003550.13273295IPR015880Zinc finger, C2H2-like
PfamPF139123.2E-9273297IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242273300IPR007087Zinc finger, C2H2
PROSITE patternPS000280275295IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-7388415No hitNo description
SMARTSM003553.7393415IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.182393415IPR007087Zinc finger, C2H2
PfamPF139124.8E-11393416IPR007087Zinc finger, C2H2
PROSITE patternPS000280395415IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MQPSPSPPRA RPSPSSQQAS TYKHFCRVCN KGFTCGSALG GHMRAHGVGD NDGLGGDNDD  60
DDSDDNSLVD DALRRGRVRG GADDVWNANG ASSSGATNHV YALRTNPNRI TRSRQVCKNC  120
GKEFTSWEHF LEHGKCNSGE EDDDDVDHSL QLLSPDGEDD PAPAAAWSKG KRSRRAKLIG  180
GALDASPTAS ASACEAGGEE EDLAKCLVML SESKVQQTPI AEAEQESSAS ASREDRTPIS  240
FIEPVAFAPY TAMLPPPPMP TPQYASTVPR GMFECKACKK VFSSHQALGG HRASHKKVKG  300
CFAAKLDNNN NGGEPSRQAA DADRDADVHS RKLNANAASD VRIRNVVDAI TNGEANAGTS  360
EAAAAELSMA ITPMSPAIAA LAAAPMKKKG KMHECSVCHR LFTSGQALGG HKRCHWLTSS  420
PAEHAASVAN DMVVTSCHPL AFRPMPDAPE PALGLSIAAN PPPPLVSVAA AIRSQAVGGG  480
SSFLDAPPPV YIPSAPAMPS NAAVHRNKAT ATTGSQNDND HAAEDEADSG STVKRARLSD  540
LKDVSMAGET TPWLQVGIGS SSRGGGGGDD TDKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR04G17100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634601.10.0uncharacterized protein LOC4336604
TrEMBLA0A0D9W7Z00.0A0A0D9W7Z0_9ORYZ; Uncharacterized protein
STRINGLPERR04G17100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.14e-12C2H2-like zinc finger protein