PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G13880.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 312aa MW: 34112 Da PI: 5.4418

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G13880.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.9	3.3e-11	120	178	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l++l+ l+se+ LPERR04G13880.1 120 KRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTSEN 178 9************************************************9999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.9E-18	116	180	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.139	118	181	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-9	120	178	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-11	120	175	No hit	No description
SuperFamily	SSF57959	2.18E-11	120	175	No hit	No description
CDD	cd14703	3.24E-22	121	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MDPAASTSAA ESSRDVVAAM PDSPPRRAAR HRRAQSEILL GAALPDDIGF DADLGVVGEV 60 GGGGDDYEEE EDEDYDEEGA GGSRMFEMFL EAGGKLEMGA DAKKAISDAK LAELALVDPK 120 RAKRILANRQ SAARSKERKM RYIAELERKV QTLQTEATTL SAQLSMLQRD TTGLTSENSD 180 LKIRVQTMEQ QVRLQDALND RLRDEIQKLK IATGQVNANC SKVGNFGLSS YGGANPQGYQ 240 RNHVQSLLAA QQLQQLQIHS QHQQQQMHLQ QQHLSTVQQQ LLQEDLKMKG IVAASHAQNA 300 GASESHALRS EP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G13880.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064429	1e-106	AK064429.1 Oryza sativa Japonica Group cDNA clone:002-110-C11, full insert sequence.
GenBank	AL606627	1e-106	AL606627.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence.
GenBank	AP014960	1e-106	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-106	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855196	1e-106	CR855196.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159F11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633411.1	1e-135	transcription factor RF2a-like
Swissprot	Q04088	4e-74	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A0D9W6N7	0.0	A0A0D9W6N7_9ORYZ; Uncharacterized protein
STRING	LPERR04G13880.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12302	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	5e-62	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]