PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR04G05850.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 440aa MW: 45344.8 Da PI: 7.1416

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR04G05850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.7e-10	273	320	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq LPERR04G05850.1 273 SHSLAERVRRERISERMKLLQSLVPGC----NKITGKALMLDEIINYVQSLQ 320 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.52E-11	267	324	No hit	No description
SuperFamily	SSF47459	6.8E-17	267	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.612	269	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-16	269	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-7	273	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	275	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MANEHFFPGD YFSSSSTSSA AAPPPMPPGG FDATAAAAAM AAYGGGMMPL WAAEQMMMAE 60 SAAQQHFDSA LSSLVSSPGA GGGFGMNGAG DDVAIGDLIG RLGSICSGAN NESCYSTPLS 120 SPPRCPPPPM TSFRAYAAAA AGETGRLSRV SSSKSLGAGA GAAALESSEA EMRPATATAT 180 ATAMPETQPP SKPSTTAAAA ARKRKSSAAK AKAAAAASSL PAATAAAEKA SPKRTKVAGD 240 VDGGGEAAAE EEKAEAPKDY IHVRARRGQA TDSHSLAERV RRERISERMK LLQSLVPGCN 300 KITGKALMLD EIINYVQSLQ RQVEFLSMKL ATMNPHLDFD GHYLSSKDMK DMSIPTYPSG 360 DPTAATAFSY TGLPATTDPF TAYNCWELDL HTAMQMGATA TGLNHNTSVT TLVHSPSSLP 420 HHPPPPPHGF YGGSSSRGRQ

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MANEHFFPGD YFSSSSTSSA AAPPPMPPGG FDATAAAAAM AAYGGGMMPL WAAEQMMMAE  60
SAAQQHFDSA LSSLVSSPGA GGGFGMNGAG DDVAIGDLIG RLGSICSGAN NESCYSTPLS  120
SPPRCPPPPM TSFRAYAAAA AGETGRLSRV SSSKSLGAGA GAAALESSEA EMRPATATAT  180
ATAMPETQPP SKPSTTAAAA ARKRKSSAAK AKAAAAASSL PAATAAAEKA SPKRTKVAGD  240
VDGGGEAAAE EEKAEAPKDY IHVRARRGQA TDSHSLAERV RRERISERMK LLQSLVPGCN  300
KITGKALMLD EIINYVQSLQ RQVEFLSMKL ATMNPHLDFD GHYLSSKDMK DMSIPTYPSG  360
DPTAATAFSY TGLPATTDPF TAYNCWELDL HTAMQMGATA TGLNHNTSVT TLVHSPSSLP  420
HHPPPPPHGF YGGSSSRGRQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR04G05850.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635665.2	1e-130	LOW QUALITY PROTEIN: transcription factor bHLH62
TrEMBL	A0A0D9W3R6	0.0	A0A0D9W3R6_9ORYZ; Uncharacterized protein
STRING	LPERR04G05850.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12547	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-47	bHLH family protein