PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G29930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | AP2 | ||||||||
Protein Properties | Length: 621aa MW: 64115.8 Da PI: 7.1647 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.1 | 1.9e-12 | 284 | 340 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g LPERR03G29930.1 284 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 340 78*******************77776664346655.77******************98 PP | |||||||
2 | AP2 | 48 | 3.2e-15 | 383 | 434 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g LPERR03G29930.1 383 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 434 57****************999754...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-9 | 284 | 340 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-14 | 284 | 349 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.44E-17 | 284 | 348 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-12 | 285 | 349 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.359 | 285 | 348 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-23 | 285 | 354 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 286 | 297 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-10 | 383 | 434 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.09E-23 | 383 | 444 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-18 | 383 | 443 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-18 | 384 | 442 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 384 | 442 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-34 | 384 | 448 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-6 | 424 | 444 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MASGSSSSGS IGATAGGSSW LGFSLSPHCP GVDDVGGRQH HHEYQHYHHQ QQHGGGGLFY 60 NPAAVASSFY YADAGVVTSS PAGNGGAGGG GFKSDGSLYT MGGNDQEQQH GVVVSASLSP 120 PKLEDFLGSA AAGPGAMALA LDNSAFYYSH AGAGGGFLQC AGGAVHDAAA AQLAHDQSAA 180 AAMAAAGWAM HGGSGGYEIA GVADDVCSGG AIMPGAVTHI HPLTLSMSSA GSQSSCVTVQ 240 AAAAAAGGEQ YQAMDAVSKK RGGGSGQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA 300 HLWDNSCKKE GQTRKGRQGG YDMEEKAARA YDLAALKYWG PSTHINFPLE DYQEELEEMK 360 NMSRLEYVAH LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVSGNKDL YLGTFSTQEE 420 AAEAYDVAAI KFRGLNAVTN FDITRYDVDK ILESSTLLPS DLARRKGGKD AAGVVASAAE 480 TAAVANAAAA LVQAGNAAEW KMAAGGGAQH QHGGHHELMS SDAFSALHDI VSTVDGGGGA 540 AHVSNTSSSM ATASLCNSCD QSPDRRGVDG GGGLAMLFAK PAASKAMMTP LPLTSWTAPA 600 PARPAGVSIA HLPMFAAWTD A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G29930.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241712 | 0.0 | AK241712.1 Oryza sativa Japonica Group cDNA, clone: J065197H24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879550.1 | 0.0 | AP2-like ethylene-responsive transcription factor CRL5 isoform X2 | ||||
Swissprot | Q84Z02 | 1e-166 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A0D9VZI2 | 0.0 | A0A0D9VZI2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G29930.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-122 | AP2 family protein |
Publications ? help Back to Top | |||
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