PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G28330.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 404aa    MW: 43937 Da    PI: 5.2289
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G28330.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.88e-34911812101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+ye+++d++ ++++sw   gnsfvv+d + f+  +Lp+yFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +gkkell+
  LPERR03G28330.1  91 FLCKTYEVVDDPSSDTVVSWGFAGNSFVVWDANAFSAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGKKELLK 175
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +ikr++
  LPERR03G28330.1 176 TIKRRR 181
                      ****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5787180IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3687180IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.18E-3387180IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-3091180IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-1891114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-18129141IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340130154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-18142154IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSGRLEASVP AKLSDRRVYI QWGGALFWSR FRRSLRSEIM NPLHVIVKEE ELDYAAAVAA  60
EGGGSPSSWA AGMLDLPRPM EGLGETGPPP FLCKTYEVVD DPSSDTVVSW GFAGNSFVVW  120
DANAFSAVLL PRYFKHSNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGK KELLKTIKRR  180
RPPPTSPPSS SSSSSSSAAA AAAACLEVGQ FGRDGEVDRL QRDKSVLIAE VVKLRQEQQT  240
TRAQMQAMEE RISAAEQKQQ QMTVFLARAM KNPGFLQMLV DRHGGAAANR EIEDALSKKR  300
RRPIEYLLPH QNGETIAAAA AVSPADGVSE TDDVSTPRGE GGSGGGGDTE SFWKQLLSLG  360
LEERGGGGHE SGRGGGADVD NSGEDDDDDD VDVLVQSIYH LSPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-267218010129Heat shock factor protein 1
5d5v_B6e-267218010129Heat shock factor protein 1
5d5v_D6e-267218010129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G28330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3324650.0AY332465.1 Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds.
GenBankAY3444860.0AY344486.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds.
GenBankAY9981180.0AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628945.11e-179heat stress transcription factor A-2a
SwissprotQ84MN71e-180HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A0D9VYV80.0A0A0D9VYV8_9ORYZ; Uncharacterized protein
STRINGLPERR03G28330.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.17e-85heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]