PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR03G27220.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 338aa    MW: 36369.1 Da    PI: 5.478
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR03G27220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12159206355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  LPERR03G27220.1 159 QEHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 206
                      67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.025156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17159224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-17159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10159206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-13161210No hitNo description
SMARTSM003533.7E-15162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDGLLEQYT EQQIAVAFGQ AAAGEVDLVQ QQYAAGEHRP  60
RKAAKVNTSW DSCITEQGSP ADSSSPTILS FAGGVAAQAQ SAAAAAPYYA GAVKPKQEMD  120
APPFSHPAKR SYDAMVADVA AAKVAAPTPA ASRPASQNQE HILAERKRRE KLSQRFIALS  180
KIVPGLKKMD KASVLGDAIK YVKQLQEQVK GLEEDARRRP VEAAVLVKKS QLSADDDDGS  240
SCDENFDGGA EAAGLPEIEA RVSDRTVLVK IHCENRKGAL ITALTEVESL GLTIMNTNVL  300
PFTSSSLDIT IMATAGEDFS LSVKDIVKKL NQAFKLSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169ERKRRE
2165170RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR03G27220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1205390.0AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795190.10.0transcription factor bHLH18-like
TrEMBLA0A0D9VYG60.0A0A0D9VYG6_9ORYZ; Uncharacterized protein
STRINGLPERR03G27220.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-56bHLH family protein