 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR03G22460.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
Family |
LSD |
Protein Properties |
Length: 246aa MW: 25967 Da PI: 8.5863 |
Description |
LSD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR03G22460.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-LSD1 | 41.8 | 1.7e-13 | 71 | 95 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr +L+YP GApsV+CalC+++
LPERR03G22460.1 71 CHGCRSVLRYPSGAPSVCCALCQAI 95
***********************97 PP
|
2 | zf-LSD1 | 39.1 | 1.2e-12 | 112 | 136 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+Y+r+A VRC++C tV
LPERR03G22460.1 112 CGGCRTLLMYTRNADTVRCSCCSTV 136
***********************99 PP
|
3 | zf-LSD1 | 48.4 | 1.6e-15 | 150 | 173 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
Cg+Crt+L+YP+GApsV+Ca+C+
LPERR03G22460.1 150 CGQCRTTLMYPYGAPSVKCAICHY 173
**********************96 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 246 aa
Download sequence Send
to blast |
MTPSPPKHPP LDSSTRILLA AAAAPSPATS AAAKVFAEPR FPCAGRETYE SEVYGSRLLL 60 ASPGMQSQIV CHGCRSVLRY PSGAPSVCCA LCQAITTVPP PAPVLEMAHL ICGGCRTLLM 120 YTRNADTVRC SCCSTVNLVR PVNNIAHVSC GQCRTTLMYP YGAPSVKCAI CHYITNTGMN 180 TMAPTPSPMP TSSGSSYNAP STSVPTSRSQ NVTVVVENPM TVDEKGKLVS PPKTRLYTTN 240 ISSLLN
|
Functional Description ? help
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Source |
Description |
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK111569 | 0.0 | AK111569.1 Oryza sativa Japonica Group cDNA clone:J013071E13, full insert sequence. |
GenBank | CT830679 | 0.0 | CT830679.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA116O15, full insert sequence. |