PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G22350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 23430.9 Da PI: 7.5075 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.9 | 1.5e-12 | 67 | 111 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h e+Er+RR+++N +f Lr +P+ +++Ka+ L Av YI +L LPERR03G22350.1 67 HVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAVAYIADL 111 889**********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.265 | 62 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.92E-12 | 67 | 115 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.0E-15 | 67 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-15 | 67 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-10 | 67 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-10 | 68 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDELVSPYSS SSSSFLAMVE LDVCEQWLVD DAWASHSPVS SDPAAAAAKT TRRRGRKAAA 60 GGPIIGHVEA ERQRREKLNR RFCDLRAAVP TVSRMDKASL LADAVAYIAD LRRRIDCLEA 120 EAKKGAAAHV AVAPDGLEIM MVGQEAASVR LTTTASQMQH APARMMCALR ALGLAVQHAS 180 VTRVASGATV QDVMVDVPSA LQDEGCLRAA LLLMLRHDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 5e-19 | 65 | 121 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G22350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006525 | 3e-45 | AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03. | |||
GenBank | AP007254 | 3e-45 | AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08. | |||
GenBank | AP014965 | 3e-45 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 3e-45 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004974086.2 | 1e-63 | transcription factor MYC2 | ||||
TrEMBL | A0A0D9VWN5 | 1e-154 | A0A0D9VWN5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G22350.1 | 1e-155 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 9e-22 | bHLH family protein |