PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G21380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | B3 | ||||||||
Protein Properties | Length: 175aa MW: 19279.9 Da PI: 8.7547 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59 | 8.1e-19 | 10 | 87 | 15 | 98 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 r ++p kfa+++g k + +++l+ +g++ +v + k+s++ vlt+GW Fv+++++k gDf+vF+++++s+f +vk+f LPERR03G21380.1 10 RRTIPHKFAQNFGDK--IQGMIKLKACNGNTCSVLV--AKCSEKLVLTAGWAAFVRSHDIKIGDFLVFRYISNSQF--KVKIFG 87 469******766655..4449***************..**********************************9*99..999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.998 | 1 | 89 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-6 | 7 | 89 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.16E-21 | 10 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.29E-19 | 10 | 86 | No hit | No description |
Pfam | PF02362 | 1.7E-16 | 10 | 86 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-21 | 11 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MATAASFFLR RTIPHKFAQN FGDKIQGMIK LKACNGNTCS VLVAKCSEKL VLTAGWAAFV 60 RSHDIKIGDF LVFRYISNSQ FKVKIFGPSG CVKASSHNAA KVAHDVQNMQ GDLIGISSSS 120 DNNLLKQWLT TERQNELEMD GTDNCNEKMK TENAFSSKDD QETPAASGYV LSRTF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G21380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025879561.1 | 9e-73 | putative B3 domain-containing protein Os03g0621600 isoform X5 | ||||
Swissprot | Q851V5 | 6e-68 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0D9VWB3 | 1e-128 | A0A0D9VWB3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G21380.1 | 1e-129 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-12 | B3 family protein |