PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR03G13190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | AP2 | ||||||||
Protein Properties | Length: 404aa MW: 43820 Da PI: 9.2688 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.8 | 8.4e-11 | 130 | 186 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g krk + g ++ ++Aa+a++ a++k++g LPERR03G13190.1 130 SCYRGVTRHRWTGRYEAHLWDnSCRrEGqKRKGRQ-GGYDKDDKAARAYDLAALKYWG 186 79*******************55554446667777.669998*************987 PP | |||||||
2 | AP2 | 50.8 | 4e-16 | 229 | 281 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++grW A+I +s +k +lg+f t++eAa+a++ a++k++g+ LPERR03G13190.1 229 SIYRGVTRHHQQGRWQARIGRVSG---NKDLYLGTFATEQEAAEAYDVAALKFRGA 281 57****************999754...5**********99*************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-8 | 130 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-14 | 130 | 195 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-12 | 131 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.069 | 131 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-19 | 131 | 200 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.42E-17 | 132 | 194 | No hit | No description |
PRINTS | PR00367 | 7.1E-7 | 132 | 143 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-11 | 229 | 280 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-18 | 229 | 289 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.16E-24 | 229 | 290 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-19 | 230 | 288 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.085 | 230 | 288 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-30 | 230 | 294 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-7 | 270 | 290 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MSPPTNGAIS HAFPPMGPMA PDALLFPFDG LSYDDFAFLP PAAPAPAPLT VADHPAPLLL 60 LPPSPSSCNN GDYATGGNMA LAAPTSTTTE STPATPTSWG GGAGGGSSAR AVRSLSPVMP 120 PVQVTGQRTS CYRGVTRHRW TGRYEAHLWD NSCRREGQKR KGRQGGYDKD DKAARAYDLA 180 ALKYWGVNAT TNFPKESYAK ELEEMQNMSK QELVASLRRK SNGFSRGASI YRGVTRHHQQ 240 GRWQARIGRV SGNKDLYLGT FATEQEAAEA YDVAALKFRG ANAVTNFEPS RYNLQAISQN 300 DLPITPSGRR QINKKPAPEA EGQIALHSPA ISQQSSNSSV PNYLFHNLLQ FQPYGPPQAL 360 PLLGYNFAEP GFYWPLGDEE QKVQPNTKVE MANGLLHLAN YAAN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR03G13190.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109839 | 0.0 | AK109839.1 Oryza sativa Japonica Group cDNA clone:002-148-D11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629274.1 | 1e-166 | AP2-like ethylene-responsive transcription factor AIL7 | ||||
Swissprot | Q5YGP7 | 1e-104 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A0D9VTA9 | 0.0 | A0A0D9VTA9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR03G13190.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13579 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 3e-76 | AP2 family protein |