PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR03G10060.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 420aa MW: 44763.8 Da PI: 5.0916

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR03G10060.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.5e-13	211	257	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++++++k+L LPERR03G10060.1 211 KSHSEAERRRRERINAHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 257 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	17.022	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-11	211	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-15	212	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-15	212	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.44E-5	221	260	No hit	No description
CDD	cd04873	3.68E-6	295	341	No hit	No description
Gene3D	G3DSA:3.30.70.260	1.5E-4	295	345	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MGAHGDHHHH HHNHHQEAGM LVDEEEEEEI EHEHEHEHEQ EQACGGPTSG VVEQEMGGDD 60 GGGVCQDATG MVFEATSSVG SVSATMGPPP IMCWPPLPQP VHGAIHHHNL GGGGGQQSPF 120 FPLLPPLPPQ PPPPPPFFAD FYARRALQYA YDQSGGASSS SDPLGLGGLY MGHHHGGGMM 180 MPPPFAPSPF GDLGRMTAQE IMDAKALAAS KSHSEAERRR RERINAHLAR LRSLLPNTTK 240 TDKASLLAEV IQHVKELKRQ TSEITEEACP LPTESDELTV DASSDEDGRL VVRASLCCDD 300 RTDLLPDLIR ALKALRLRAL KAEITTLGGR VKNVLVVTGD DSACAGTDGG GEADQQEEEA 360 MMQAPMSPQH TVASIQDALR AVMERTASAT EESGGSGAGG GGLKRQRTTS LSAILENRSI

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MGAHGDHHHH HHNHHQEAGM LVDEEEEEEI EHEHEHEHEQ EQACGGPTSG VVEQEMGGDD  60
GGGVCQDATG MVFEATSSVG SVSATMGPPP IMCWPPLPQP VHGAIHHHNL GGGGGQQSPF  120
FPLLPPLPPQ PPPPPPFFAD FYARRALQYA YDQSGGASSS SDPLGLGGLY MGHHHGGGMM  180
MPPPFAPSPF GDLGRMTAQE IMDAKALAAS KSHSEAERRR RERINAHLAR LRSLLPNTTK  240
TDKASLLAEV IQHVKELKRQ TSEITEEACP LPTESDELTV DASSDEDGRL VVRASLCCDD  300
RTDLLPDLIR ALKALRLRAL KAEITTLGGR VKNVLVVTGD DSACAGTDGG GEADQQEEEA  360
MMQAPMSPQH TVASIQDALR AVMERTASAT EESGGSGAGG GGLKRQRTTS LSAILENRSI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	221	ERRRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR03G10060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106649	0.0	AK106649.1 Oryza sativa Japonica Group cDNA clone:002-113-F07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006649780.1	0.0	PREDICTED: transcription factor bHLH30-like
Swissprot	Q9S7Y1	3e-76	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0D9VS54	0.0	A0A0D9VS54_9ORYZ; Uncharacterized protein
STRING	LPERR03G10060.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	7e-55	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]