PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G31960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bZIP | ||||||||
Protein Properties | Length: 132aa MW: 14425.4 Da PI: 9.7924 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.2 | 1.4e-16 | 58 | 117 | 1 | 60 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 e+e ++++r++kNRe+A rsR+RK+a+++eLe++v L +eN +Lk ++lk e+a+l LPERR02G31960.1 58 EEEERKTIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRHCKQLKTEMAALI 117 678899***********************************************9999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.0E-16 | 56 | 117 | No hit | No description |
PRINTS | PR00041 | 1.5E-5 | 57 | 73 | IPR001630 | cAMP response element binding (CREB) protein |
Pfam | PF00170 | 5.2E-14 | 58 | 116 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 7.2E-14 | 58 | 122 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.507 | 60 | 116 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.39E-14 | 62 | 116 | No hit | No description |
SuperFamily | SSF57959 | 9.0E-13 | 62 | 118 | No hit | No description |
PRINTS | PR00041 | 1.5E-5 | 75 | 95 | IPR001630 | cAMP response element binding (CREB) protein |
PRINTS | PR00041 | 1.5E-5 | 95 | 112 | IPR001630 | cAMP response element binding (CREB) protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MAEQLGSPQL SLSSCSSFLS ISSAAADGAP HLSLGAGGGE ELDLLMQVGI GGGGGDEEEE 60 ERKTIRMMKN RESALRSRAR KRAYVQELEK EVRRLVNENL KLKRHCKQLK TEMAALIQPT 120 TKQSSHRRSS ST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G31960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061086 | 1e-129 | AK061086.1 Oryza sativa Japonica Group cDNA clone:006-206-G05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006648186.1 | 2e-55 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 3e-12 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A0D9VN60 | 3e-89 | A0A0D9VN60_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G31960.1 | 5e-90 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4017 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 3e-13 | bZIP family protein |