PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G21210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 249aa MW: 27460.4 Da PI: 4.7629 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4.1e-18 | 52 | 105 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F+ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ LPERR02G21210.1 52 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 105 458**************8899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 123.3 | 1.1e-39 | 50 | 143 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR++tkq+E+dy+aL+++ydal+++ e+L++++ +L+++++e LPERR02G21210.1 50 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRTKQIEHDYAALRAQYDALHARVESLKRDKLALAAQVDE 143 69*****************9999******************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.75E-17 | 42 | 109 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 46 | 107 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-17 | 49 | 111 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-15 | 52 | 105 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-18 | 52 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.25E-17 | 55 | 108 | No hit | No description |
PRINTS | PR00031 | 6.0E-7 | 78 | 87 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 82 | 105 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.0E-7 | 87 | 103 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.5E-16 | 107 | 148 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MESDCQFLVP QPHMYYDTAA ADGAQFLQLQ QQMAAADYHA AGRGDGGGGE RKRRFTEEQV 60 RSLETTFHAR RAKLEPREKA ELARELGLQP RQVAIWFQNK RARWRTKQIE HDYAALRAQY 120 DALHARVESL KRDKLALAAQ VDELRGKLNE RQDQSGSCDG GGLAEGDDKK NIDRVNASSS 180 SCVVGEDVSF LAVPVVDVSE DASASAVGGG YGCDDDHGLD YVGGGLPEPF CATLDLWETW 240 PMVEWNAVS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G21210.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063685 | 1e-166 | AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence. | |||
GenBank | EU847515 | 1e-166 | EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015624138.1 | 1e-112 | homeobox-leucine zipper protein HOX24 | ||||
Swissprot | A2X7U1 | 1e-115 | HOX24_ORYSI; Homeobox-leucine zipper protein HOX24 | ||||
TrEMBL | A0A0D9VIX2 | 0.0 | A0A0D9VIX2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G21210.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-33 | homeobox 7 |