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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR02G19270.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
CO-like |
Protein Properties |
Length: 282aa MW: 29550.7 Da PI: 4.5172 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR02G19270.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 20.7 | 8.4e-07 | 26 | 52 | 4 | 30 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCl 30
r C+ ++ + ++l+C+ ++ +lC C
LPERR02G19270.1 26 RPCDACGAEAARLYCRADGAFLCGGCD 52
67************************7 PP
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2 | CCT | 72.3 | 1.2e-24 | 210 | 253 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpRvKGrF+k+a
LPERR02G19270.1 210 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRVKGRFAKRA 253
9*****************************************97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MEAEDKPMVG AGAGYSSSSW GLGTTRPCDA CGAEAARLYC RADGAFLCGG CDRVPVAPFF 60 GALTDATPPP HGAGADAAQV EEHAEDDDDE DGLSNEAEAA SWLLPEPDDN NCHDDSGGAA 120 AAAFFADTGA YLGVDLDFAR SMDGIKAIGV PVAPPELDLA AGGLFYPDHS HSINHSLSSS 180 SEVAVVPDAV SAGAAPSMMV VVTASKGKER EARLMRYREK RKNRRFDKTI RYASRKAYAE 240 TRPRVKGRFA KRADDDTLLP ETPCSPAFSS ALTASDGVVP SF
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G15840.1 | 7e-27 | B-box type zinc finger protein with CCT domain |