PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G18900.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 292aa MW: 30411.8 Da PI: 8.3803

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G18900.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	228	273	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Ave+Ik Lq LPERR02G18900.1 228 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 273 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.723	222	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-16	225	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.01E-13	226	277	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.9E-15	227	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-13	228	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-10	228	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MRRFLPVGVG GMEPTSSGQH GEAEAAGLRF GGGDISLGPH GSGGGGGHHL QDGSVDLLAR 60 HSSSPAGFFS NLMVSNGFPG SKAGGGGRGG TEAQQHHSMA NNSGSGSGSG RKMKSQMSFT 120 GGGPPHLAHI AEDGGGGGFH DRAGAEASVP RTFSAGGSSS GGGFSIVGPW EESRDIISTL 180 GGYESQFGGM ASTSALEMAG MDRYMQLQHD QVPFKVRAKR GCATHPRSIA ERERRTRISE 240 KLRKLQELVP NMDKQTSTAD MLDLAVEHIK GLQTQLQALK HEQEKCTCCN RP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G18900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110833	0.0	AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625725.1	1e-145	transcription factor bHLH128 isoform X1
Swissprot	Q8H102	9e-53	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A0D9VI00	0.0	A0A0D9VI00_9ORYZ; Uncharacterized protein
STRING	LPERR02G18900.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11531	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	5e-48	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]