PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G15580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | E2F/DP | ||||||||
Protein Properties | Length: 436aa MW: 47416.8 Da PI: 4.8021 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 48.2 | 1.8e-15 | 138 | 168 | 39 | 71 |
E2F_TDP 39 vknkrRRiYDilNVLealnliekkekneirwkg 71 v ++RRiYDi+NVLe+++liek+ kn+irwkg LPERR02G15580.1 138 V--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 168 4..9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 6.1E-9 | 58 | 168 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.9E-11 | 130 | 169 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.9E-15 | 132 | 170 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.9E-13 | 136 | 168 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 7.70E-49 | 178 | 284 | No hit | No description |
SuperFamily | SSF144074 | 8.37E-34 | 181 | 284 | No hit | No description |
Pfam | PF16421 | 1.9E-32 | 183 | 282 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MAWTRPMGQS LRPPLPFAAS SRSPFAAPND YHRFPSPAAA GPSGSGGIGA GGVGGGGDIE 60 EGLVIRTPQK RKAPSKENDV AESSHCMITS PGFTGSPLLT PVSAKSAKTP KSKTKNNKAG 120 PQTPTSNVHH SIHQLLLVQK RRIYDITNVL EGIGLIEKTL KNRIRWKGLD DSGTEVDNGL 180 SALQAEVENL SLKEQSLDNR ISDMREKLQG LTEDENNHRW LYVTEDDIKG LPCFQNETLI 240 AIKAPHGTTL EVPDPDEAGD YLQRRYRIVL RSTMGPIDVY LVSQFDEKFE ELGGGATPSA 300 HANVPQHQPT EVFNATSAGA GQCSNSFAVE NNVQHCQSVP PDPSGSHDFG GMTRIIPSDI 360 DTDADYWLLS EGDISITDMW KSAQVQWEEG LDTDVFLSED ISTPRAHNQQ PAEAAGPLMQ 420 HPTSVEQDME ELLLWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5tuv_B | 1e-19 | 175 | 284 | 5 | 111 | Transcription factor E2F5 |
5tuv_E | 1e-19 | 175 | 284 | 5 | 111 | Transcription factor E2F5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G15580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB041725 | 0.0 | AB041725.1 Oryza sativa OsE2F1 mRNA for E2F homolog, complete cds. | |||
GenBank | AK068689 | 0.0 | AK068689.1 Oryza sativa Japonica Group cDNA clone:J013161I16, full insert sequence. | |||
GenBank | HQ858830 | 0.0 | HQ858830.1 Oryza sativa Japonica Group isolate UT1329 E2F-DP transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623378.1 | 0.0 | transcription factor E2FB | ||||
TrEMBL | A0A0D9VGR8 | 0.0 | A0A0D9VGR8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR02G15580.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 9e-87 | E2F transcription factor 3 |