PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G10690.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

GeBP

Protein Properties

Length: 609aa MW: 64795.2 Da PI: 7.3034

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G10690.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	34	8.2e-11	212	302	5	97
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 + w+ De+ +L l+ +++g++ ++d++++ + +s++ k v+ s + eK+r+LK++++ kk++ g +ke+d +++ls+ iWg LPERR02G10690.1 212 SRWTTADELKILDILVAHFKSHGTQ--LNVDGIISAAGDSLDRKgVKYSVMYEKVRSLKQRYEATAKKVAGGGA-LPAKEDDLRMYQLSSEIWG 302 56************999999954..6999******98835567788************776666.56788899********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.3E-16	213	302	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MAKKRRAPSP PPPPPPEAES SDESSSGDEE DEGKDSPAAA PVPPQKKPSD HGAASSEGEE 60 DDEEEVDSDT DTYAQGFQLR KVGGAPDDEE GEEVGEEEGG SSESEPEDPE PVKKKEAAKK 120 SKSEEAKKKR AADEPAPSGK AKKAKGEKEA ASPPPEPVPS GKSKKAVAKG AAVKKTAAAA 180 AAAEPAPSGK AKKAKVEPDP SPSSKSGKAA VSRWTTADEL KILDILVAHF KSHGTQLNVD 240 GIISAAGDSL DRKGVKYSVM YEKVRSLKQR YEATAKKVAG GGALPAKEDD LRMYQLSSEI 300 WGEDAKEAAA AALASQKNGT PAKSKKGQAK KDKVDGDSKE AATAVNEKGG SLEENKRGKS 360 TKQKTGMDTK IGSSKEVALT ASPKKKGDHK EKLDEEAKGG TSKDTATNAS HKDGKDGSLV 420 GSKRGKADKE KLDGDKGTVM PKETTAIANR DDGTLVVSKK GKADKEKLDG HIESVIPKEA 480 DADTQNGGIL TKEGNNHKDE IDRDAIVTSI RREFVELQSL YPNLASFVNR IEVQHPCGST 540 FKRAFEFISD DKASTMESKI KKQKISEVKM QLRLADTRKD MVGLKIQVSE DLLLGRELRK 600 MMRESGPLD

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MAKKRRAPSP PPPPPPEAES SDESSSGDEE DEGKDSPAAA PVPPQKKPSD HGAASSEGEE  60
DDEEEVDSDT DTYAQGFQLR KVGGAPDDEE GEEVGEEEGG SSESEPEDPE PVKKKEAAKK  120
SKSEEAKKKR AADEPAPSGK AKKAKGEKEA ASPPPEPVPS GKSKKAVAKG AAVKKTAAAA  180
AAAEPAPSGK AKKAKVEPDP SPSSKSGKAA VSRWTTADEL KILDILVAHF KSHGTQLNVD  240
GIISAAGDSL DRKGVKYSVM YEKVRSLKQR YEATAKKVAG GGALPAKEDD LRMYQLSSEI  300
WGEDAKEAAA AALASQKNGT PAKSKKGQAK KDKVDGDSKE AATAVNEKGG SLEENKRGKS  360
TKQKTGMDTK IGSSKEVALT ASPKKKGDHK EKLDEEAKGG TSKDTATNAS HKDGKDGSLV  420
GSKRGKADKE KLDGDKGTVM PKETTAIANR DDGTLVVSKK GKADKEKLDG HIESVIPKEA  480
DADTQNGGIL TKEGNNHKDE IDRDAIVTSI RREFVELQSL YPNLASFVNR IEVQHPCGST  540
FKRAFEFISD DKASTMESKI KKQKISEVKM QLRLADTRKD MVGLKIQVSE DLLLGRELRK  600
MMRESGPLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	129	KKKEAAKKSKSEEAKKKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G10690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626761.1	0.0	neurofilament medium polypeptide
TrEMBL	A0A0D9VEY5	0.0	A0A0D9VEY5_9ORYZ; Uncharacterized protein
STRING	LPERR02G10690.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37