PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G08320.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 292aa    MW: 31144.8 Da    PI: 5.2296
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G08320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.42.2e-33151062102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k+y++++d++++ +i w +++nsfvv d+  f++++Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll+
  LPERR02G08320.1  15 FVAKTYRMVDDPATDGVICWGRDSNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHVSFLRGQTHLLR 99 
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r++s
  LPERR02G08320.1 100 RIVRRSS 106
                      ****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.99E-3311104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.8E-3711104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.5E-5311104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-2915104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-171538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-175365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTTATAAEGG GVAPFVAKTY RMVDDPATDG VICWGRDSNS FVVADPFAFS QTLLPAHFKH  60
SNFSSFVRQL NTYGFRKVDP DRWEFAHVSF LRGQTHLLRR IVRRSSGGGG GGKRNKEESG  120
EAAGEMDEES AMVAMEVARL RQEQREIEEK VAAMWRRVQE TERRPKQMLA FLVKVVGDPT  180
VLRRLLASGT AAADENGARS EAKRPRLLLD AGDAVTTTTA AAAGRSVVDG FYSGVGGCAP  240
ELDAFVPDDT VDFTGLYTGG DGFGDAAAAA AAGVVDGGYA PTAYAFPVDS GY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-25610420129Heat shock factor protein 1
5d5v_B9e-25610420129Heat shock factor protein 1
5d5v_D9e-25610420129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G08320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1064881e-133AK106488.1 Oryza sativa Japonica Group cDNA clone:002-105-A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623571.11e-131heat stress transcription factor C-2a
SwissprotQ6EUG41e-132HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A0D9VE280.0A0A0D9VE28_9ORYZ; Uncharacterized protein
STRINGLPERR02G08320.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-62heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]