PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR02G07820.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 592aa    MW: 61929.3 Da    PI: 7.4669
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR02G07820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12380423553
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                      h + ErrRR+r+N++fe+Lr llP+       K +Ka++L k+ eY++ 
  LPERR02G07820.1 380 HMISERRRRERLNESFEQLRALLPPG-----SKKDKATVLAKTLEYMNL 423
                      8899********************95.....599************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.732375424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-16377448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14379444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10380423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11381430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.09E-6390424No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MDTIFLLGEE SRRRILHRAA ACLPGCAYIC AWAPAPLPPP QISSSSSVAV GRLIYCVDAW  60
FISGGDGDVR QLFDAYRGSV CAAVTGCVPG WAYIGGGEYM ELPEIELAGS ASLPVQQRFY  120
QEAGIKMAAF MGCDSGEIEV GFSTPPAANY GVSGGGGLQA NMEQVFSEDF FQQSLLEEFL  180
QLSPTRPSSS SSSPLPSLSV DAAASTSSSL LLRPIPPSSS PSPTTTTILH PRHVSPFARH  240
AAVVAGAGIA GGGVLEFPSA DADDAAMAQA MLHVISSSPS TPSSASANHM MTRSPRRGTA  300
TAFRPYAAAL APRRRTAAGG QRMIKMGISI LRRMHMVRCS QEHAVAAGVA RRGNEGGEEE  360
DSSPAAAAAG AAPTSSQLHH MISERRRRER LNESFEQLRA LLPPGSKKDK ATVLAKTLEY  420
MNLLIAQISE LESTNRSLQL QTQIHHQHAI NGPITSSMIR TVNEVHHHHQ LPLAGGGIGS  480
PERVHVQVIA GGGASSSSPE VTVRVAARGG GGDVSELVLR LLKLIKEMGR FTVVAVDARQ  540
PAAGGGGGGG GAQASLTLRA MTAGEFDEAS LKEAVTKAVE NLVTSSPPLP MP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1383388ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR02G07820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057971e-43AP005797.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1131G07.
GenBankAP0149581e-43AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-43CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623939.10.0putative transcription factor bHLH041
TrEMBLA0A0D9VDV80.0A0A0D9VDV8_9ORYZ; Uncharacterized protein
STRINGLPERR02G07820.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-16bHLH family protein