PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR02G05460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ARR-B | ||||||||
Protein Properties | Length: 621aa MW: 68118 Da PI: 6.4651 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88.3 | 7.2e-28 | 208 | 261 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G+ekA+Pk+il+lm+v+ +t+e+v+SHLQkYRl LPERR02G05460.1 208 KPRVVWSVELHRKFVAAVNQL-GIEKAVPKKILDLMNVENITRENVASHLQKYRL 261 79*******************.********************************8 PP | |||||||
2 | Response_reg | 81.6 | 2.6e-27 | 27 | 135 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl vdD+p+ +++l+++l++ +y +v+++ ++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+ge +++ + + LPERR02G05460.1 27 VLAVDDDPTCLKILENLLRRCQY-HVTTTGQAATALKMLRENKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGETQTVMKGITH 118 799********************.***************888889*******************87754.558********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l Kp+ e+l++ LPERR02G05460.1 119 GACDYLLKPVRLEQLRT 135 **************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 5.2E-196 | 1 | 621 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 3.3E-43 | 24 | 165 | No hit | No description |
SuperFamily | SSF52172 | 5.55E-36 | 24 | 147 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 3.6E-33 | 25 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.267 | 26 | 141 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.7E-24 | 27 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.35E-28 | 28 | 141 | No hit | No description |
PROSITE profile | PS51294 | 10.912 | 205 | 264 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-19 | 205 | 265 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-29 | 206 | 266 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-24 | 208 | 261 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.8E-6 | 210 | 260 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MTVEERQGKV NGGGGGDRDQ FPVGMRVLAV DDDPTCLKIL ENLLRRCQYH VTTTGQAATA 60 LKMLRENKDQ FDLVISDVHM PDMDGFKLLE LVGLEMDLPV IMLSANGETQ TVMKGITHGA 120 CDYLLKPVRL EQLRTIWQHV IRRKNCDAKN RGNDDDAGQK AQGMNNEGEN ICANRKRLSR 180 KGRDENGDDG DDSDENSNEN ADSSTQKKPR VVWSVELHRK FVAAVNQLGI EKAVPKKILD 240 LMNVENITRE NVASHLQKYR LYLKRLSTDA SRQANLAAAF GGRNPAYINM NSFGNYNAYG 300 RYRPVPTPGH TQANNILTRM NSPSAFGVHG LLPSQPIQLG HAQNNLSTSL NDLGGLNNGN 360 LIRGPQMSTI LSGPSGNTFP NISNGAPLAT ANRSLQPLES SNQQHLGRLH SSSADPFSTL 420 IGDSPQFPDL GRSSNTWQTA VPSNIQECGH NDSMSQTTLH MNGPKIEPVS SFTATNQIPL 480 LGNEMQSQVA SLASNVPIAF NQDTSPFPYG SRTKSRDMLN NSHGFSNSSI NTSLPNLRID 540 NPTVPRQTLD GGNTGIVPPM HDGRIHHQAV SNQLNYNDDL MRTTGLQRDL SGGLDDIVVD 600 MFRPDREDDG VPFIDGDWEL V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 8e-26 | 204 | 267 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR02G05460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK100530 | 0.0 | AK100530.1 Oryza sativa Japonica Group cDNA clone:J023101H04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015626716.1 | 0.0 | two-component response regulator ORR24 | ||||
Swissprot | Q6H805 | 0.0 | ORR24_ORYSJ; Two-component response regulator ORR24 | ||||
TrEMBL | A0A0D9VD05 | 0.0 | A0A0D9VD05_9ORYZ; Two-component response regulator | ||||
STRING | LPERR02G05460.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-112 | response regulator 12 |
Publications ? help Back to Top | |||
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