PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR02G04880.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

SBP

Protein Properties

Length: 329aa MW: 35786.2 Da PI: 8.5644

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR02G04880.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.4	2.4e-39	67	144	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC ++l +k+yhr+h+vCe+h+k p v+v+g+e+rfCqqCsrfh+lsefD++krsCrrrL +hn+rrrk+q+ LPERR02G04880.1 67 RCQVEGCGVELVGVKDYHRKHRVCEAHAKFPRVVVAGQERRFCQQCSRFHALSEFDQTKRSCRRRLYDHNARRRKPQT 144 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	3.6E-32	61	129	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.676	65	142	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.01E-38	66	147	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.0E-30	68	141	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MDWMAPPKPP TSPSSPPLLW DWADAAVPGS SSGETPPAAV PAAAPGRRRK DKRARAEESS 60 AGAGEVRCQV EGCGVELVGV KDYHRKHRVC EAHAKFPRVV VAGQERRFCQ QCSRFHALSE 120 FDQTKRSCRR RLYDHNARRR KPQTEAFSFA PARLSSSLLF DDSQQISFVW NKTPHSPSHV 180 RPYAVSPWDS SSEVGTADGH IYLDKSHLSK SVPTINPDIH ELLQLKGPDA SLTASKLDGA 240 PDLQHALSLL SASSCGLPDP VPVQQASCLI QFTGTSHSNR ELPPLYGGNS SASCAYVQPM 300 AQLSQLVRFS MDASSNACGS NFFGLNKIN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-25	59	141	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	51	RRRKDK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR02G04880.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK061484	0.0	AK061484.1 Oryza sativa Japonica Group cDNA clone:006-308-H09, full insert sequence.
GenBank	AK068702	0.0	AK068702.1 Oryza sativa Japonica Group cDNA clone:J013159I15, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623076.1	1e-168	squamosa promoter-binding-like protein 4 isoform X2
Swissprot	Q6H509	1e-115	SPL4_ORYSJ; Squamosa promoter-binding-like protein 4
TrEMBL	A0A0D9VCS7	0.0	A0A0D9VCS7_9ORYZ; Uncharacterized protein
STRING	LPERR02G04880.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6271	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	3e-41	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]