PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G37540.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YB
Protein Properties Length: 360aa    MW: 38688.1 Da    PI: 6.8684
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G37540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1733.2e-5438133297
            NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                      +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ yl+kyreleg
  LPERR01G37540.1  38 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFSALGFDDYVDPMRRYLNKYRELEG 131
                      89******************************************************************************************** PP

            NF-YB  96 ek 97 
                      ++
  LPERR01G37540.1 132 DR 133
                      97 PP
2NF-YB143.64.6e-45238328494
            NF-YB   4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      qd++lPianv+rimk  lP +akisk aket+qec++efisfvt+eas++c+re+rkt+ngdd+++a+ tlG+++y++++  yl++yre e
  LPERR01G37540.1 238 QDNLLPIANVGRIMKDGLPPQAKISKRAKETIQECATEFISFVTGEASERCRRERRKTVNGDDICHAMRTLGLDHYADAMARYLQRYRESE 328
                      89***************************************************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.8E-5133145IPR009072Histone-fold
SuperFamilySSF471132.95E-3840144IPR009072Histone-fold
PfamPF008082.0E-2643106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.9E-177189No hitNo description
PROSITE patternPS0068507490IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.9E-1790108No hitNo description
PRINTSPR006151.9E-17109127No hitNo description
Gene3DG3DSA:1.10.20.102.1E-41236338IPR009072Histone-fold
SuperFamilySSF471137.45E-33238342IPR009072Histone-fold
PfamPF008085.8E-24242305IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PROSITE patternPS006850272288IPR003956Transcription factor, NFYB/HAP3, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MADHHGGDAA AAADGRRNQY QLAGEGSSAA GEAAEMIKEQ DRLLPIANVG RIMKQILPPN  60
AKISKEAKET MQECVSEFIS FVTGEASDKC HKEKRKTVNG DDVCWAFSAL GFDDYVDPMR  120
RYLNKYRELE GDRAAASAAA SSSSRPAGGG GGGGGGGGPD VGAGVATGHF MFNAMDRTDS  180
NTNNSRQYTP LFHPEMSRDL NFSAFSQMGR LQPMQSLPRA PPPSSSASGA ASGMNGGQDN  240
LLPIANVGRI MKDGLPPQAK ISKRAKETIQ ECATEFISFV TGEASERCRR ERRKTVNGDD  300
ICHAMRTLGL DHYADAMARY LQRYRESEEL AASLNNSNAG AGIQIDVRAE LSIFRGNQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A7e-4037326697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G37540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880381e-125AB288038.1 Oryza sativa Japonica Group OsHAP3D gene for HAP3 subunit of HAP complex, complete cds.
GenBankAP0032461e-125AP003246.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423A12.
GenBankAP0032661e-125AP003266.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0492G09.
GenBankAP0149571e-125AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-125CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankCT8365731e-125CT836573.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128I01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690868.19e-93PREDICTED: transcriptional activator hap3-like
SwissprotO822483e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A0D9V9Y70.0A0A0D9V9Y7_9ORYZ; Uncharacterized protein
STRINGLPERR01G37540.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.18e-55nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]