PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G35760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 268aa MW: 28926.9 Da PI: 5.4009 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5e-06 | 244 | 267 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ C+k+F++++ L+ H + H LPERR01G35760.1 244 YACKSCNKTFNSSMGLEAHSKAkH 267 89*****************88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.946 | 244 | 268 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 246 | 267 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
METNMGFWGI VVRPGETVKC DPPGELYYHI SQIALEPGEL SENVHVFVEV DGDESDEEVP 60 LAIPLYPRLD DDKVKEAQHS PSKLSGHKYA AAAASPIPEV VVPERKNYGK RKADDKVSDE 120 EDGDDSGVGE SDDDEDSSDD GESSDEEETP LKGKNRPVET PLKTPPQKKM KLATPIMSKA 180 GTGTSRSGGG YVHVATPHPA KQAKKTAGNN DMFKKSAGYV HVATPHPAKR TPANNDMSKH 240 SDGYACKSCN KTFNSSMGLE AHSKAKHT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G35760.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241121 | 7e-50 | AK241121.1 Oryza sativa Japonica Group cDNA, clone: J065094J12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694821.1 | 2e-88 | PREDICTED: histone deacetylase HDT2-like | ||||
TrEMBL | A0A0D9V9B1 | 0.0 | A0A0D9V9B1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G35760.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11173 | 20 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 3e-11 | histone deacetylase 2C |