PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G35240.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 371aa    MW: 39064.7 Da    PI: 8.0787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G35240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64e-12305350655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L++l+P+     +k  + +++L  Av+YIk+Lq
  LPERR01G35240.1 305 SIAERERRTRISKRLKKLQDLVPNM----DKQTNTSDMLDIAVNYIKELQ 350
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014475.75E-694104No hitNo description
SuperFamilySSF1014475.75E-6227273No hitNo description
PROSITE profilePS5088814.253299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15302359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.80E-13303354No hitNo description
Gene3DG3DSA:4.10.280.106.3E-15304360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-13305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MNRLTPSHGG MPPPPPQAMG RLGQQPSSLA RYGSAPGSLL ASIADSVIRG GDHPIPFPAT  60
AAGGMVMPRY HYSGESSGLT SCESSCGRTT AAAPPPPPPP PPPPQTLERA YGGSGEIHVS  120
AAMAPHDGGG GGVPLFRHSS SPAGLLSRLM ADPHGMAATR GMGSYSGSDA MAQRRLSSQW  180
SFSRQDLPQI SEMGGIIPDI GESIVTGGSS SDGGGAGQSS SFLSRNFSMS SWDDTNSNIM  240
FSPPNSSKKA RLGDHGDDFS NIDSQFGLSK SSLEMPGMDD FMQLQSDSIA CRARAKRGCA  300
THPRSIAERE RRTRISKRLK KLQDLVPNMD KQTNTSDMLD IAVNYIKELQ GQVQELKNDQ  360
ANCTCSGKLS C
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G35240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682541e-117AK068254.1 Oryza sativa Japonica Group cDNA clone:J013149F02, full insert sequence.
GenBankAK1057131e-117AK105713.1 Oryza sativa Japonica Group cDNA clone:001-201-E12, full insert sequence.
GenBankHQ8588591e-117HQ858859.1 Oryza sativa Japonica Group isolate UT1668 bHLH transcription factor mRNA, partial cds.
GenBankHQ8588681e-117HQ858868.1 Oryza sativa Japonica Group isolate UT1677 HLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814593.11e-158transcription factor bHLH128-like
TrEMBLA0A0D9V9390.0A0A0D9V939_9ORYZ; Uncharacterized protein
STRINGLPERR01G35240.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.17e-58bHLH family protein